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python
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TnSeq as ZINB? Alternatives in R?
DESeq2
R
edgeR
Python
TnSeq
updated 16 months ago by
chaco001
• 0 • written 17 months ago by
David R
▴ 90
1
vote
0
replies
789
views
Job:
Bioconductor Core developers group opening
R
cloud
github
python
git
20 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
889
views
Change the interval of bed file
mappability
bed
python
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
1
reply
804
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
kusum
• 0
0
votes
0
replies
827
views
Job:
Senior Data Engineer | Poland | remote
AWS
BigData
Engineer
python
3.0 years ago
Ewa
• 0
1
vote
2
replies
1.5k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.0 years ago
Raito92
▴ 60
1
vote
2
replies
1.3k
views
Load data with rhdf5
rhdf5
python
updated 14 months ago by
alex46015
• 0 • written 4.0 years ago by
jose.wo
• 0
2
votes
4
replies
1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R
python
normalization
matrix
updated 4.7 years ago by
shahryary
▴ 30 • written 4.7 years ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
938
views
Job:
Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS
BIOINFORMATICS
SEATTLE
R
PYTHON
Job
4.7 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
842
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
5.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.0k
views
Job:
Bioinformatics Scientist II
bioinformatics
scientist
python
computational
Job
5.2 years ago
careers
• 0
0
votes
0
replies
1.0k
views
Job:
2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job
rna-seq
chipseq
gsea
python
Job
5.7 years ago
l.brown
▴ 10
1
vote
1
reply
776
views
Python functionality feature request
python
bioconductor
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
quijotejmartinez
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
6.1 years ago
EMBL Recruitment
• 0
2
votes
0
replies
1.2k
views
Job:
Full-time bioinformatics instructor position at Fred Hutch
R
shell
Python
SQL
Job
6.2 years ago
ematsen
▴ 20
5
votes
0
replies
1.4k
views
Job:
Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R
python
deep learning
machine learning
cancer genomics
Job
7.1 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.4k
views
Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Programmer (Statistician) at University of California at San Francisco
R
bioinformatician job
Perl
Python
statistics
Job
8.0 years ago • updated 7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.9k
views
Job:
Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics
data science
python
SQL
Job
8.2 years ago
Doe, Aimee
▴ 40
5
votes
23
replies
6.2k
views
Convertion of indexed bam file to tsv file format
python
samtools
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
malikbashirkhan2
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
3
votes
4
replies
1.6k
views
seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
8.6 years ago
termanini
▴ 10
0
votes
0
replies
1.6k
views
Job:
Calling all Clinical Genomic Scientist
computational biology
genomics
genetics
Python
java
Job
8.8 years ago
careers
• 0
23 results • Page
1 of 1
Recent ...
Replies
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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