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Convertion of indexed bam file to tsv file format
python samtools
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
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seq2pathway error on Mac OS X
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8.6 years ago termanini ▴ 10
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Load data with rhdf5
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updated 14 months ago by • 0 • written 4.0 years ago by • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago Raito92 ▴ 60
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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
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Python functionality feature request
python bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
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Change the interval of bed file
mappability bed python
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
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Job: Bioinformatics Scientist II
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5.2 years ago careers • 0
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R Python Computational-Biology Cancer Job
5.1 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
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4.7 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Bioconductor Core developers group opening
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20 months ago Vincent J. Carey, Jr. 6.7k
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5.7 years ago l.brown ▴ 10
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
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8.5 years ago Fiona ▴ 70
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1.9k
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8.2 years ago Doe, Aimee ▴ 40
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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8.0 years ago • updated 7.7 years ago clif.duhn • 0
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7.7 years ago clif.duhn • 0
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7.1 years ago Shamith.Samarajiwa ▴ 180
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6.2 years ago ematsen ▴ 20
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6.1 years ago EMBL Recruitment • 0
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Job: Calling all Clinical Genomic Scientist
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8.8 years ago careers • 0
23 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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