Showing : qPCR • reset
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HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
1
vote
7
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1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0
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4
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1.5k
views
Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
13.9 years ago Heidi Dvinge ★ 2.0k
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2
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1.9k
views
reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
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5
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1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 10.4 years ago by ▴ 590 • written 10.4 years ago by ★ 4.2k
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2
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1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 30
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4
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1.2k
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HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
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12
replies
1.8k
views
htqPCR question
miRNA qPCR Normalization limma miRNA qPCR Normalization limma
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 810
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4
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2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 30
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4
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1.0k
views
HTqPCR and factorial design
qPCR HTqPCR qPCR HTqPCR
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 810
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3
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1.5k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 13.2 years ago by ★ 6.0k • written 13.2 years ago by 50k
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3
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1.1k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 12.5 years ago by ▴ 300 • written 12.5 years ago by ★ 13k
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2
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946
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 410
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2
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1.2k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Tobias Straub ▴ 430
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6
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1.5k
views
HT qPCR - error in scale rank invariant
miRNA qPCR miRNA qPCR
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ▴ 810
0
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17
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2.6k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.0 years ago by ★ 13k • written 10.9 years ago by ▴ 330
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2
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2.2k
views
Fwd: help
qPCR qPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 30
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4
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1.1k
views
HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 810
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3
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983
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
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2
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1.0k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Lucia Peixoto ▴ 330
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5
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1.5k
views
dataset dim for siggenes
qPCR limma siggenes
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 100
0
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1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 9.7 years ago by 41k • written 9.7 years ago by ★ 13k
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
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1
reply
1.2k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.6 years ago by ▴ 360 • written 17.6 years ago by ▴ 10
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2
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1.5k
views
HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
1
reply
935
views
normalization usinf the delta Ct method
qPCR Normalization qPCR Normalization
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 810
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2
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1.3k
views
questions concerning quantile normalization in HTqPCR
miRNA qPCR miRNA qPCR
updated 13.6 years ago by ★ 2.0k • written 13.6 years ago by ▴ 810
0
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2
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2.2k
views
First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 30
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2
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1.6k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.2 years ago by ▴ 150 • written 10.2 years ago by ▴ 50
1
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1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
1
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2
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1.6k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
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2
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2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
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1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
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1
reply
927
views
Normalization of array leads to decrease in number of differentially expressed genes
qPCR Normalization qPCR Normalization
updated 11.8 years ago by ▴ 430 • written 11.8 years ago by ▴ 290
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1
reply
880
views
HTqPCR Normalization
qPCR qPCR
updated 11.8 years ago by ▴ 300 • written 11.8 years ago by ▴ 10
0
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1
reply
1.3k
views
replicating ReadqPCR
qPCR qPCR
updated 11.2 years ago by ▴ 300 • written 11.2 years ago by ★ 13k
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9
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1.5k
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htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 14.0 years ago by ▴ 810 • written 14.0 years ago by ★ 2.0k
0
votes
1
reply
797
views
clusterCt {HTqPCR}
qPCR qPCR
updated 12.1 years ago by ★ 2.0k • written 12.1 years ago by ▴ 290
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1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 810
0
votes
1
reply
994
views
HTqPCR
qPCR limma HTqPCR qPCR limma HTqPCR
11.9 years ago Heidi Dvinge ★ 2.0k
0
votes
5
replies
1.7k
views
HTqPCR problem
qPCR qPCR
updated 11.9 years ago by ▴ 200 • written 11.9 years ago by ▴ 860
0
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2
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745
views
Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
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1
reply
1.1k
views
HTqPCR
qPCR PROcess HTqPCR qPCR PROcess HTqPCR
12.7 years ago • updated 12.6 years ago Heidi Dvinge ★ 2.0k
0
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1
reply
834
views
Testing biased microarray data
qPCR limma qPCR limma
updated 13.1 years ago by ★ 3.7k • written 13.1 years ago by ▴ 370
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2
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1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR HTqPCR qPCR HTqPCR
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 10
0
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1
reply
1.3k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 13.6 years ago by ▴ 260 • written 13.7 years ago by ▴ 330
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1
reply
1.1k
views
PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 12.6 years ago by ★ 2.0k • written 12.6 years ago by ▴ 20
0
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4
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1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.8 years ago by ★ 2.0k
0
votes
1
reply
1.3k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago • updated 15.3 years ago qPCR Platform - the reference in real-t… ▴ 170
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1
reply
4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
50 results • Page 1 of 1
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Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error by James W. MacDonald 65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference by Michael Love 41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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