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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
There are some QC probes that you might use. ``` > library(pd.hg.u219) > library(DBI) > con <- db(pd.hg.u219) > dbListTables(con) […
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Bine
▴ 20
Thank you. The jpg it creates this way is empty. Remember I am doing it in R Notebook. But it did work with ggsave(). Many thanks
Comment: How to best visualize multi-level transcriptomics experiment data?
by
mohammedtoufiq91
▴ 10
@aliibarry Sure, let me try `rowVars`.
Comment: Quantile Normalization after rma or not?
by
James W. MacDonald
59k
Affymetrix arrays have multiple probes that are meant to measure each transcript and are summarized to give an overall estimate of the tran…
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Kevin Blighe
3.5k
Hi, you just need the jpeg() function, for example: jpeg('EV.jpg') EnhancedVolcano(top_volcano, lab = top_vo…
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Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
Answer: How to best visualize multi-level transcriptomics experiment data?
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
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