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Question: Error when running QoRTs for JunctionSeq
DEXSeq JunctionSeq RNAseq QoRTs
9 months ago • updated 8 months ago n.tear ▴ 20
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JunctionSeq on multiple conditions
junctionseq qorts multiple factor design relevel
4.8 years ago Assa Yeroslaviz ★ 1.5k
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Comment: Error with hclust by ATpoint ▴ 870
https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/
Comment: Error with hclust by devbhavin20 • 0
Thank you @ATpoint can you suggest some good tutorials for WGCNA?
Comment: DEseq2 replicate normalization by michael.morash • 0
Yes, thank you. This has helped me a great deal. I was having a hard time wrapping my head around what the different designs were telling D…
Answer: Error with hclust by ATpoint ▴ 870
The proper getter function to get expression data from the ExpressionSet class is `exprs()` which gives probes as rows and samples as comlu…
Comment: deseq2 datasetfrommatrix by ATpoint ▴ 870
Cross-posted: https://www.biostars.org/p/9500079/
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Answer: Error with hclust
Filtering of RNA-seq data in EdgeR
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C: Using limma for quantitative proteomics data
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