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qpcr
•
reset
3
votes
0
replies
479
views
Creating qPCRset for nondetects anlaysis from QuantStudio data
nondetects
qPCR
qPCRData
2.9 years ago
jhackett
▴ 30
3
votes
4
replies
2.8k
views
Using limma for the analysis of qPCR data
NormqPCR
EasyqpcR
qPCR
HTqPCR
limma
updated 2.4 years ago by
Ming
▴ 380 • written 3.2 years ago by
enricoferrero
▴ 660
1
vote
2
replies
1.6k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR
Sample Maximization Analysis
Experimental Design
qRT-PCR
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
Marcelo Laia
▴ 450
1
vote
1
reply
1.7k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray
qPCR
limma
updated 9.5 years ago by
Gordon Smyth
50k • written 9.6 years ago by
Calin-Jageman, Robert
▴ 30
1
vote
7
replies
1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.1 years ago • updated 6.1 years ago
joe.d.moore.ii
• 0
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct
qPCR
updated 2.8 years ago by
Pengcheng Yang
▴ 60 • written 9.0 years ago by
gv
▴ 40
1
vote
0
replies
1.0k
views
HTqPCR package data layout - how flexible is it?
qPCR
qPCR
9.8 years ago
Guest User
★ 13k
1
vote
4
replies
1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR
ddCt
geneexpression
updated 6.7 years ago by
Zhang, Jitao David
▴ 120 • written 6.7 years ago by
rbronste
▴ 60
1
vote
1
reply
1.2k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR
ReadqPCR
qPCR
ReadqPCR
11.2 years ago
boczniak767
▴ 720
1
vote
0
replies
1.8k
views
DE analysis of PCR array [was: dataset dim for siggenes]
qPCR
Normalization
multtest
limma
siggenes
9.5 years ago • updated 7.2 years ago
Gordon Smyth
50k
0
votes
3
replies
1.4k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq
qPCR
edgeR
DESeq
RNASeq
qPCR
edgeR
DESeq
updated 13.1 years ago by
Naomi Altman
★ 6.0k • written 13.1 years ago by
Gordon Smyth
50k
0
votes
0
replies
722
views
alternative CDF (Tarca, Adi)
qPCR
cdf
probe
affy
qPCR
cdf
probe
affy
17.9 years ago
raffaele calogero
▴ 500
0
votes
0
replies
912
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR
affy
affydata
vsn
limma
gcrma
matchprobes
affyPLM
affyio
BRAIN
qPCR
affy
affydata
17.6 years ago
k. brand
▴ 420
0
votes
2
replies
935
views
how to 'bootstrap' expression data?
qPCR
GO
qPCR
GO
updated 16.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.5 years ago by
Johnstone, Alice
▴ 410
0
votes
1
reply
1.2k
views
R: Degradation plots - Affy package
Transcription
qPCR
Genetics
probe
affy
Transcription
qPCR
Genetics
probe
affy
updated 17.6 years ago by
Alberto Goldoni
▴ 360 • written 17.6 years ago by
Graeme Smethurst
▴ 10
0
votes
4
replies
1.2k
views
HTqPCR questions
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.2 years ago by
alessandro.guffanti@genomnia.com
▴ 330 • written 13.2 years ago by
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA
qPCR
HTqPCR
miRNA
qPCR
HTqPCR
13.4 years ago
Heidi Dvinge
★ 2.0k
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR
Annotation
HTqPCR
qPCR
Annotation
HTqPCR
11.1 years ago
Guest User
★ 13k
0
votes
0
replies
974
views
qPCR workshops in autumn 2008
qPCR
qPCR
15.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
3
replies
964
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
885
views
Noch freie Workshop Plätze im Oktober 2008
qPCR
qPCR
15.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
878
views
Noch freie qPCR Workshop Plätze im Oktober 2008
qPCR
qPCR
15.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
15.4 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
1
reply
1.3k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
PROcess
microRNA
SNP
qPCR
15.3 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.4k
views
qPCR NEWS - December 2008
qPCR
graph
PROcess
microRNA
qPCR
graph
PROcess
microRNA
15.3 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
3
replies
1.1k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA
qPCR
affy
miRNA
qPCR
affy
updated 12.4 years ago by
james perkins
▴ 300 • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
qPCR NEWS - February 2009
qPCR
Normalization
PROcess
microRNA
qPCR
Normalization
PROcess
microRNA
15.1 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
954
views
New microRNA & qPCR workshop in April 2009
SNP
qPCR
Normalization
Regression
microRNA
SNP
qPCR
Normalization
Regression
microRNA
15.0 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
615
views
High Throughput RTqPCR data
qPCR
qPCR
14.7 years ago
james perkins
▴ 300
0
votes
0
replies
929
views
PLS help: is it sound to normalized highthrouput qPCR arrays using vsn?
qPCR
Normalization
vsn
qPCR
Normalization
vsn
11.9 years ago
Ali Mohammadian
▴ 290
0
votes
0
replies
1.5k
views
HTqPCR
qPCR
limma
ddCt
HTqPCR
qPCR
limma
ddCt
HTqPCR
11.5 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.1k
views
qPCR 2011 Symposium Talk and Poster CALL
qPCR
Genetics
microRNA
qPCR
Genetics
microRNA
13.3 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.5k
views
qPCR event preview - April 2010
miRNA
qPCR
Normalization
probe
microRNA
cycle
miRNA
qPCR
Normalization
probe
microRNA
13.9 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.1k
views
qPCR plates containing multiple samples in HTqPCR
qPCR
HTqPCR
qPCR
HTqPCR
14.1 years ago
Heidi Dvinge
★ 2.0k
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray
qPCR
Classification
limma
HTqPCR
ASSIGN
Microarray
qPCR
Classification
limma
updated 14.2 years ago by
Naomi Altman
★ 6.0k • written 14.2 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.2k
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP
qPCR
Normalization
Visualization
Regression
Cancer
probe
microRNA
SNP
qPCR
Cancer
15.2 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
4
replies
1.1k
views
HTqPCR only works for 384 qPCR plates
qPCR
qPCR
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
Andreia Fonseca
▴ 810
0
votes
9
replies
1.5k
views
htqPCR question
miRNA
qPCR
limma
miRNA
qPCR
limma
updated 13.9 years ago by
Andreia Fonseca
▴ 810 • written 13.9 years ago by
Heidi Dvinge
★ 2.0k
0
votes
12
replies
1.8k
views
htqPCR question
miRNA
qPCR
Normalization
limma
miRNA
qPCR
Normalization
limma
updated 13.9 years ago by
Heidi Dvinge
★ 2.0k • written 13.9 years ago by
Andreia Fonseca
▴ 810
0
votes
4
replies
1.4k
views
Reading in data with HTqPCR
qPCR
Cancer
cycle
HTqPCR
qPCR
Cancer
cycle
HTqPCR
13.8 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
1.2k
views
Experimental design for RNA-Seq
Sequencing
qPCR
Cancer
Sequencing
qPCR
Cancer
13.8 years ago
Jakob Hedegaard
▴ 170
0
votes
4
replies
2.3k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR
HTqPCR
qPCR
HTqPCR
updated 13.8 years ago by
Heidi Dvinge
★ 2.0k • written 13.8 years ago by
V. Oostra
▴ 30
0
votes
2
replies
1.7k
views
Bacterial genomics
Sequencing
Microarray
qPCR
genomes
Sequencing
Microarray
qPCR
genomes
updated 13.6 years ago by
Hervé Pagès
16k • written 13.6 years ago by
Mathieu Parent
▴ 30
0
votes
2
replies
1.0k
views
Advise on setting up a non-specific filter for differential expression
qPCR
qPCR
13.6 years ago
Lucia Peixoto
▴ 330
0
votes
2
replies
1.2k
views
Advise on setting up a non-specific filter for differential expression
qPCR
qPCR
13.6 years ago
Tobias Straub
▴ 430
0
votes
1
reply
1.2k
views
gcrma vs rma
Microarray
qPCR
probe
ROC
limma
gcrma
Microarray
qPCR
probe
ROC
limma
gcrma
updated 13.6 years ago by
Zhijin Wu
▴ 260 • written 13.6 years ago by
Lucia Peixoto
▴ 330
0
votes
2
replies
1.2k
views
questions concerning quantile normalization in HTqPCR
miRNA
qPCR
miRNA
qPCR
updated 13.5 years ago by
Heidi Dvinge
★ 2.0k • written 13.6 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
927
views
normalization usinf the delta Ct method
qPCR
Normalization
qPCR
Normalization
updated 13.6 years ago by
Wolfgang Huber
★ 13k • written 13.6 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.1k
views
qPCR Event Calendar - autumn/winter 2010
qPCR
Normalization
Clustering
probe
microRNA
qPCR
Normalization
Clustering
probe
microRNA
13.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
744
views
Any code for simulation of qPCR studies?
qPCR
qPCR
12.1 years ago
Ali Mohammadian
▴ 290
50 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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