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qsea
•
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0
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0
replies
109
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
7 weeks ago
User3088
• 0
0
votes
1
reply
467
views
QSEA:Error in h(simpleError(msg, call))
qsea
6 months ago
kf
• 0
1
vote
2
replies
469
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 10 months ago by
Researcher
▴ 10
0
votes
2
replies
555
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
13 months ago • updated 7 weeks ago
User3088
• 0
2
votes
1
reply
751
views
QSEA: normalisation >> sequencing preference
qsea
updated 2.1 years ago by
Matthias Lienhard
▴ 280 • written 2.1 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.1k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 2.1 years ago by
Matthias Lienhard
▴ 280 • written 2.1 years ago by
a.riediger
▴ 20
1
vote
4
replies
1.6k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 2.5 years ago by
Simon Pearce
• 0 • written 2.5 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.1k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 2.6 years ago by
Simon Pearce
• 0 • written 2.7 years ago by
Marianna
▴ 20
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.8 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.2k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.9 years ago • updated 3.8 years ago
rtrivedi1
▴ 10
0
votes
1
reply
875
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.9 years ago by
Matthias Lienhard
▴ 280 • written 4.0 years ago by
el466
• 0
1
vote
1
reply
1.3k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.2 years ago by
Matthias Lienhard
▴ 280 • written 4.2 years ago by
mbk0asis
• 0
0
votes
2
replies
1.0k
views
Qsea - plotCoverage
Qsea
updated 4.9 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.3k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 5.1 years ago by
Matthias Lienhard
▴ 280 • written 5.1 years ago by
Simon Pearce
• 0
0
votes
1
reply
904
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.1 years ago by
Matthias Lienhard
▴ 280 • written 5.1 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
1.9k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 10 weeks ago by
Lukas
▴ 20 • written 5.6 years ago by
LNathanson
• 0
0
votes
0
replies
1.3k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
6.4 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.0k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 6.8 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
apt.university
• 0
0
votes
8
replies
2.0k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.9 years ago by
Matthias Lienhard
▴ 280 • written 6.9 years ago by
wildist
• 0
0
votes
3
replies
1.5k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 7.1 years ago by
Matthias Lienhard
▴ 280 • written 7.1 years ago by
geekyvt
• 0
1
vote
2
replies
1.3k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.1 years ago by
Matthias Lienhard
▴ 280 • written 7.1 years ago by
geekyvt
• 0
1
vote
3
replies
1.6k
views
QSEA Error while loading the bam files
qsea
updated 7.1 years ago by
Matthias Lienhard
▴ 280 • written 7.1 years ago by
geekyvt
• 0
9
votes
18
replies
4.0k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 14 months ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
justinburgener
▴ 20
23 results • Page
1 of 1
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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