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qsea
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0
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67
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
12 days ago
User3088
• 0
0
votes
1
reply
402
views
QSEA:Error in h(simpleError(msg, call))
qsea
5 months ago
kf
• 0
1
vote
2
replies
414
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 9 months ago by
Researcher
▴ 10
0
votes
2
replies
504
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
12 months ago • updated 12 days ago
User3088
• 0
9
votes
18
replies
3.8k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 13 months ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
justinburgener
▴ 20
2
votes
1
reply
712
views
QSEA: normalisation >> sequencing preference
qsea
updated 24 months ago by
Matthias Lienhard
▴ 280 • written 24 months ago by
a.riediger
▴ 20
1
vote
1
reply
1.0k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 24 months ago by
Matthias Lienhard
▴ 280 • written 24 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.5k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 2.4 years ago by
Simon Pearce
• 0 • written 2.4 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.1k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 2.5 years ago by
Simon Pearce
• 0 • written 2.5 years ago by
Marianna
▴ 20
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.6 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.1k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.7 years ago
rtrivedi1
▴ 10
0
votes
1
reply
840
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.7 years ago by
Matthias Lienhard
▴ 280 • written 3.9 years ago by
el466
• 0
1
vote
1
reply
1.2k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.1 years ago by
Matthias Lienhard
▴ 280 • written 4.1 years ago by
mbk0asis
• 0
0
votes
2
replies
967
views
Qsea - plotCoverage
Qsea
updated 4.8 years ago by
Matthias Lienhard
▴ 280 • written 4.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.3k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 5.0 years ago by
Matthias Lienhard
▴ 280 • written 5.0 years ago by
Simon Pearce
• 0
0
votes
1
reply
872
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.0 years ago by
Matthias Lienhard
▴ 280 • written 5.0 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
1.8k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 4 weeks ago by
Lukas
▴ 20 • written 5.5 years ago by
LNathanson
• 0
0
votes
0
replies
1.2k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
6.3 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.0k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 6.7 years ago by
Matthias Lienhard
▴ 280 • written 6.7 years ago by
apt.university
• 0
0
votes
8
replies
1.9k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.8 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
wildist
• 0
0
votes
3
replies
1.4k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 7.0 years ago by
Matthias Lienhard
▴ 280 • written 7.0 years ago by
geekyvt
• 0
1
vote
2
replies
1.2k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.0 years ago by
Matthias Lienhard
▴ 280 • written 7.0 years ago by
geekyvt
• 0
1
vote
3
replies
1.5k
views
QSEA Error while loading the bam files
qsea
updated 7.0 years ago by
Matthias Lienhard
▴ 280 • written 7.0 years ago by
geekyvt
• 0
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Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I watched https://www.youtube.com/watch?v=npto50RJpDc and that shows some principles that are not followed in the markup for the tables at …
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I second the thanks for this post. I just tried the screen reader with macOS and see that the handling of our package tables is poor. How…
Comment: Web accessibility of Bioconductor.org
by
Michael Love
43k
hello. Thanks for your post, I'll post this also to the biocwebsite channel on the Bioconductor community slack. https://community-bioc.sl…
Answer: KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
by
Jessica
• 0
Nevermind. Just had to change to Uniprot IDs and it worked :)
Votes
Store Matrix in DataFrame Cell
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
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