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quality
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First principal component variance stabilised RNA-seq data correlates with total read counts per sample / library concentration
RNA-seq
PCA
control
DESeq2
Quality
2.1 years ago • updated 23 months ago
9906201a
▴ 20
0
votes
1
reply
822
views
Array quality metrics for large sample size
microarray
quality
updated 5.2 years ago by
Wolfgang Huber
★ 13k • written 5.2 years ago by
RV
▴ 10
0
votes
3
replies
2.2k
views
what does "mean base quality" mean?
base quality
quality
mean base quality
updated 7.5 years ago by
Mike Smith
★ 6.5k • written 7.5 years ago by
christiangriffioen
• 0
0
votes
0
replies
592
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.3 years ago
bastien_chassagnol
• 0
4 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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