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qualitycontrol
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reset
0
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863
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getsex function error.
QualityControl
methylationArrayAnalysis
2.1 years ago
zusman
• 0
0
votes
1
reply
978
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.1 years ago by
Michael Stadler
▴ 350 • written 3.1 years ago by
h.kozlowski
• 0
0
votes
0
replies
592
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.3 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
n.lu
• 0
3
votes
2
replies
889
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
978
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.1 years ago
chelsey.ju
• 0
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.4 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.6k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 7.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 7.9 years ago by
Lna
• 0
2
votes
2
replies
1.4k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.2 years ago by
Diego Diez
▴ 760 • written 8.2 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.4k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.4 years ago by
Matthew McCormack
▴ 180 • written 8.4 years ago by
NS
▴ 60
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
alakatos
▴ 130
0
votes
1
reply
1.2k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
16.9 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
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Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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