Bioconductor Qualitycontrol

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2.4k

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rna-seq GC-Content qualitycontrol

updated 8.5 years ago by Matthew McCormack ▴ 180 • written 8.5 years ago by NS ▴ 60

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1.5k

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NUSE qualitycontrol microarray

updated 8.3 years ago by Diego Diez ▴ 760 • written 8.3 years ago by jacorvar ▴ 40

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1.0k

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QualityControl Alignment QuasR

updated 3.2 years ago by Michael Stadler ▴ 350 • written 3.2 years ago by h.kozlowski • 0

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1.2k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.9 years ago Amin Moghaddasi ▴ 130

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3.7k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.0 years ago by Stephanie M. Gogarten ▴ 870 • written 8.0 years ago by Lna • 0

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1.7k

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limma affy probe qualitycontrol design and contrast matrix

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by alakatos ▴ 130

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1.4k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by n.lu • 0

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902

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qualitycontrol

updated 7.1 years ago by Mike Smith ★ 6.5k • written 7.1 years ago by XIA.PAN ▴ 20

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900

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QualityControl methylationArrayAnalysis

2.2 years ago zusman • 0

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1.1k

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.5 years ago Bouzid.a ▴ 20

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995

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.2 years ago chelsey.ju • 0

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604

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folder quality QualityControl AffyExpress

3.4 years ago bastien_chassagnol • 0

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Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

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Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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Scholar to Gordon Smyth 50k