Bioconductor Qualitycontrol

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893

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QualityControl methylationArrayAnalysis

2.2 years ago zusman • 0

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1.0k

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QualityControl Alignment QuasR

updated 3.2 years ago by Michael Stadler ▴ 350 • written 3.2 years ago by h.kozlowski • 0

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601

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folder quality QualityControl AffyExpress

3.3 years ago bastien_chassagnol • 0

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1.4k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.7 years ago by James W. MacDonald 65k • written 6.7 years ago by n.lu • 0

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901

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qualitycontrol

updated 7.1 years ago by Mike Smith ★ 6.5k • written 7.1 years ago by XIA.PAN ▴ 20

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992

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.2 years ago chelsey.ju • 0

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1.1k

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.5 years ago Bouzid.a ▴ 20

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3.7k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.9 years ago by Stephanie M. Gogarten ▴ 870 • written 7.9 years ago by Lna • 0

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1.5k

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NUSE qualitycontrol microarray

updated 8.3 years ago by Diego Diez ▴ 760 • written 8.3 years ago by jacorvar ▴ 40

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2.4k

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rna-seq GC-Content qualitycontrol

updated 8.4 years ago by Matthew McCormack ▴ 180 • written 8.4 years ago by NS ▴ 60

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1.7k

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limma affy probe qualitycontrol design and contrast matrix

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by alakatos ▴ 130

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1.2k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.9 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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