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qualitycontrol
•
reset
0
votes
0
replies
1.2k
views
getsex function error.
QualityControl
methylationArrayAnalysis
2.8 years ago
zusman
• 0
0
votes
1
reply
1.2k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.8 years ago by
Michael Stadler
▴ 350 • written 3.8 years ago by
h.kozlowski
• 0
0
votes
0
replies
727
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
4.0 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.7k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 7.3 years ago by
James W. MacDonald
67k • written 7.3 years ago by
n.lu
• 0
3
votes
2
replies
1.1k
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.7 years ago by
Mike Smith
★ 6.6k • written 7.8 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.8 years ago
chelsey.ju
• 0
2
votes
0
replies
1.2k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
8.1 years ago
Bouzid.a
▴ 20
1
vote
14
replies
4.1k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.6 years ago by
Lna
• 0
2
votes
2
replies
1.7k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.9 years ago by
Diego Diez
▴ 760 • written 8.9 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.7k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 9.1 years ago by
Matthew McCormack
▴ 180 • written 9.1 years ago by
NS
▴ 60
1
vote
2
replies
1.9k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.9 years ago by
Gordon Smyth
52k • written 9.9 years ago by
alakatos
▴ 130
0
votes
1
reply
1.4k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.6 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Comment: Can't post a question?
by
Aimee
• 0
I copied my text to a file in linux and ran: ```r grep --color='auto' -P -n "[^\x00-\x7F]" filename.txt ``` It highlighted everything that…
Answer: sva: get a sv for RIN scores
by
Gordon Smyth
52k
Surrogate variables are not constructed from known variates, so one doesn't get surrogate variables for RIN scores. I am guessing that the …
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
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ATpoint
★ 4.6k
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Gordon Smyth
52k
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bhandary.8590
▴ 20
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to
Jiping Wang
▴ 90
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