Bioconductor Qualitycontrol

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.6 years ago by Stephanie M. Gogarten ▴ 870 • written 7.6 years ago by Lna • 0

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1.4k

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NUSE qualitycontrol microarray

updated 7.9 years ago by Diego Diez ▴ 760 • written 7.9 years ago by jacorvar ▴ 40

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822

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qualitycontrol

updated 6.7 years ago by Mike Smith ★ 6.2k • written 6.7 years ago by XIA.PAN ▴ 20

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2.2k

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rna-seq GC-Content qualitycontrol

updated 8.1 years ago by Matthew McCormack ▴ 180 • written 8.1 years ago by NS ▴ 60

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1.3k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

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1.6k

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limma affy probe qualitycontrol design and contrast matrix

updated 8.9 years ago by Gordon Smyth 48k • written 8.9 years ago by alakatos ▴ 130

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1.1k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.5 years ago Amin Moghaddasi ▴ 130

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832

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QualityControl Alignment QuasR

updated 2.8 years ago by Michael Stadler ▴ 350 • written 2.8 years ago by h.kozlowski • 0

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677

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QualityControl methylationArrayAnalysis

21 months ago zusman • 0

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1.0k

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.1 years ago Bouzid.a ▴ 20

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912

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shinymethyl minfi epic microarray methylationepic qualitycontrol

6.8 years ago chelsey.ju • 0

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518

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folder quality QualityControl AffyExpress

3.0 years ago bastien_chassagnol • 0

12 results • Page 1 of 1

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Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k

This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…

Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0

Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…

Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0

I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…

Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k