Bioconductor Qualitycontrol

Showing : qualitycontrol • reset

votes

replies

677

views

QualityControl methylationArrayAnalysis

21 months ago zusman • 0

votes

831

views

QualityControl Alignment QuasR

updated 2.8 years ago by Michael Stadler ▴ 350 • written 2.8 years ago by h.kozlowski • 0

votes

replies

518

views

folder quality QualityControl AffyExpress

3.0 years ago bastien_chassagnol • 0

votes

replies

1.3k

views

qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

votes

replies

820

views

qualitycontrol

updated 6.7 years ago by Mike Smith ★ 6.2k • written 6.7 years ago by XIA.PAN ▴ 20

votes

replies

912

views

shinymethyl minfi epic microarray methylationepic qualitycontrol

6.8 years ago chelsey.ju • 0

votes

replies

1.0k

views

limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.1 years ago Bouzid.a ▴ 20

vote

replies

3.4k

views

GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.6 years ago by Stephanie M. Gogarten ▴ 870 • written 7.6 years ago by Lna • 0

votes

replies

1.4k

views

NUSE qualitycontrol microarray

updated 7.9 years ago by Diego Diez ▴ 760 • written 7.9 years ago by jacorvar ▴ 40

votes

replies

2.2k

views

rna-seq GC-Content qualitycontrol

updated 8.1 years ago by Matthew McCormack ▴ 180 • written 8.1 years ago by NS ▴ 60

vote

replies

1.6k

views

limma affy probe qualitycontrol design and contrast matrix

updated 8.9 years ago by Gordon Smyth 48k • written 8.9 years ago by alakatos ▴ 130

votes

1.1k

views

Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.5 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

Recent ...

Replies

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

Code to show it works: > library(clusterProfiler) > > ## use provided 10 IDs, plus as last one add ID that has a GO annotati…

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

You are almost there... Yet - pay attention to the error message (`--> No gene can be mapped.... --> Expected input gene ID: GO:0055080, .…

Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0

Thanks for the reply! I tried this and it is crashing at `h5createFile("test.h5")` even after reinstalling **Rhdf5lib** and **rhdf5** It …

Votes

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Comment: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k