Bioconductor Qualitycontrol

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2.2k

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rna-seq GC-Content qualitycontrol

updated 8.1 years ago by Matthew McCormack ▴ 180 • written 8.1 years ago by NS ▴ 60

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827

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qualitycontrol

updated 6.7 years ago by Mike Smith ★ 6.2k • written 6.7 years ago by XIA.PAN ▴ 20

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1.4k

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NUSE qualitycontrol microarray

updated 7.9 years ago by Diego Diez ▴ 760 • written 7.9 years ago by jacorvar ▴ 40

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1.0k

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

7.1 years ago Bouzid.a ▴ 20

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limma affy probe qualitycontrol design and contrast matrix

updated 8.9 years ago by Gordon Smyth 48k • written 8.9 years ago by alakatos ▴ 130

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3.4k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 7.6 years ago by Stephanie M. Gogarten ▴ 870 • written 7.6 years ago by Lna • 0

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687

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QualityControl methylationArrayAnalysis

22 months ago zusman • 0

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917

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shinymethyl minfi epic microarray methylationepic qualitycontrol

6.8 years ago chelsey.ju • 0

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1.3k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 6.3 years ago by James W. MacDonald 64k • written 6.3 years ago by n.lu • 0

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524

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folder quality QualityControl AffyExpress

3.0 years ago bastien_chassagnol • 0

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841

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QualityControl Alignment QuasR

updated 2.8 years ago by Michael Stadler ▴ 350 • written 2.8 years ago by h.kozlowski • 0

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

16.6 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

Recent ...

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

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Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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