Showing : quantile normalization • reset
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Limit on significant genes for TMM normalization
normalization quantile normalization tmm edger
updated 6.8 years ago by 52k • written 6.8 years ago by • 0
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3
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1.4k
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quantile normalization takes into account library size?
quantile normalization limma-voom
updated 6.8 years ago by 52k • written 6.8 years ago by • 0
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3
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Quantile normalization and Deseq2
quantile normalization deseq2
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 80
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when to apply quantile normalization with voom in limma/voom framework with RNA-seq data?
limma voom limma voom rna-seq quantile normalization
updated 8.9 years ago by 52k • written 8.9 years ago by ▴ 50
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Quantile normalization + sva for microarray experiment
sva quantile normalization microarray
updated 9.0 years ago by ★ 7.9k • written 9.0 years ago by ▴ 50
5 results • Page 1 of 1
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Comment: p value is 0, padj is 0 by Wirayatida • 0
Than you so much. My counts are 47,37 and 72 for mock. The treatment is 8153, 6723 and 8024.
Comment: p value is 0, padj is 0 by Wirayatida • 0
Thank you so much for your information. I understand it.
Comment: Help using rtracklayer for gene ID extraction by Aichatou • 0
Thank you very much for the quick response. However, I am unable to reproduce the code you provided. It starts to run, then I get the error…
Answer: Deseq2 Design by James W. MacDonald 67k
Trying to use a conventional factor analysis, particularly if you are new, is not the way to go (I have been doing this for over 20 years n…
Answer: p value is 0, padj is 0 by swbarnes2 ★ 1.4k
I think the default smallest value R will return is 1x10^-300. So I'd take a look at the counts, and see if it makes sense that the p-valu…
Votes
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
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