Bioconductor Quantile normalization

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910

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normalization quantile normalization tmm edger

updated 5.8 years ago by Gordon Smyth 49k • written 5.8 years ago by bilcodygm • 0

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1.1k

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quantile normalization limma-voom

updated 5.8 years ago by Gordon Smyth 49k • written 5.8 years ago by bilcodygm • 0

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2.2k

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quantile normalization deseq2

updated 6.1 years ago by Michael Love 41k • written 6.1 years ago by lirongrossmann ▴ 80

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17k

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limma voom limma voom rna-seq quantile normalization

updated 7.9 years ago by Gordon Smyth 49k • written 7.9 years ago by lassancejm ▴ 50

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1.8k

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sva quantile normalization microarray

updated 8.0 years ago by Ryan C. Thompson 7.8k • written 8.0 years ago by dimitri.leonid.lindenwald ▴ 50

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Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Comment: enrichGOgradient color change by WU • 0

I would like to ask how to make the counts legend black. Thank you.

Answer: Problems with FLOWAI by Alexander • 0

Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…

Answer: Asses fit of variance prior by Gordon Smyth 49k

> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…

Votes

Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

How to know if I should use voomWithQualityWeights() or not?

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Popular Question to Lluís Revilla Sancho ▴ 720

Scholar to Gordon Smyth 49k

Popular Question to Frederik Ziebell ▴ 20