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quantro
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DESeq2- Size factors (median of ratios) assumptions - global adjustment normalization?
deseq2
quantro
normalization
5.5 years ago
Victor Barrera
• 0
4
votes
14
replies
1.5k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro
RNASeq
updated 3.8 years ago by
Stephanie Hicks
▴ 80 • written 3.9 years ago by
raf4
▴ 20
1
vote
2
replies
607
views
should smooth quantile normalization be used with limma-voom?
limma-voom
smooth-quantile-normalization
quantro
20 months ago
raf4
▴ 20
0
votes
1
reply
706
views
Hope for help about quantro and qsmooth-library size normalization
normalization
quantro
q'smooth
library size normalization
4.7 years ago
Apr
• 0
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Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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