Bioconductor Quantsmooth

Showing : quantsmooth • reset

vote

1.3k

views

quantsmooth

updated 9.5 years ago by Jan Oosting ▴ 20 • written 9.6 years ago by bob.stephens.2005 • 0

votes

replies

908

views

quantsmooth quantsmooth

12.5 years ago Srinivas Srikanth ▴ 70

votes

replies

978

views

ideogram quantsmooth GenomeGraphs ideogram quantsmooth GenomeGraphs

12.8 years ago Pete Shepard ▴ 240

votes

replies

1.3k

views

Clustering annotate quantsmooth Clustering annotate quantsmooth

updated 13.0 years ago by Oosting, J. PATH ▴ 550 • written 13.0 years ago by Nandini B ▴ 30

votes

1.3k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 16.5 years ago by Matt Ritchie ▴ 460 • written 16.5 years ago by Elizabeth McClellan ▴ 10

votes

replies

930

views

Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

16.7 years ago Johnstone, Alice ▴ 410

votes

1.2k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 16.7 years ago by Mark Dunning ▴ 320 • written 16.7 years ago by Krys Kelly ▴ 270

votes

1.4k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 16.7 years ago by Mark Dunning ▴ 320 • written 16.7 years ago by Johnstone, Alice ▴ 410

votes

replies

1.5k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 16.7 years ago by Mike Smith ▴ 40 • written 16.7 years ago by Krys Kelly ▴ 270

votes

1.2k

views

Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 16.8 years ago by Matt Ritchie ▴ 460 • written 16.8 years ago by Keith James ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All