Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
quasR
•
reset
0
votes
7
replies
3.8k
views
'CreateProcess' failed to run error with Rbowtie
software error
quasr
rbowtie
10.3 years ago
annabel.ferguson
• 0
0
votes
6
replies
3.6k
views
RNA-seq analysis with R/BioC: alignment and read counts
drosophila melanogaster
quasR
genomicfeatures
genomicranges
alignment
updated 9.5 years ago by
Hervé Pagès
16k • written 9.6 years ago by
Fiona
▴ 70
0
votes
2
replies
1.8k
views
QuasR question
QuasR
updated 10.4 years ago by
Daniel Soronellas
▴ 10 • written 10.4 years ago by
Michael Stadler
▴ 350
0
votes
3
replies
1.4k
views
QuasR::qAlign: how to specify maximum allowed number of mismatches and output all alignments
QuasR
updated 5.1 years ago by
Michael Stadler
▴ 350 • written 5.1 years ago by
Julie Zhu
★ 4.3k
0
votes
8
replies
3.6k
views
QuasR: how to use an indexed reference genome?
BSgenome
BSgenome
genomes
QuasR
BSgenome
BSgenome
genomes
QuasR
updated 11.7 years ago by
Michael Stadler
▴ 350 • written 11.7 years ago by
Paul Shannon
▴ 750
0
votes
2
replies
2.0k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
sven.schuierer
• 0
2
votes
5
replies
2.4k
views
QuasR: Loading BAM files as start point
quasr
updated 9.4 years ago by
Michael Stadler
▴ 350 • written 9.4 years ago by
rahel14350
▴ 10
0
votes
5
replies
2.1k
views
SpliceMap in QuasR package failing when sorting 25mer-alignments
rnaseq
quasr
alignment
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
nadia_boufaied
• 0
2
votes
1
reply
1.1k
views
preprocessReads: Can't remove more than 17 nucleotides
QuasR
preprocessReads
updated 3.2 years ago by
James W. MacDonald
67k • written 3.2 years ago by
sha-ked
• 0
0
votes
7
replies
2.9k
views
QuasR on Linux Cluster
BSgenome
BSgenome
QuasR
BSgenome
BSgenome
QuasR
updated 11.3 years ago by
Michael Stadler
▴ 350 • written 11.3 years ago by
Ugo Borello
▴ 340
1
vote
1
reply
2.3k
views
multiple threads on QuasR
Alignment
GLAD
QuasR
Alignment
GLAD
QuasR
11.8 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.4k
views
QuasR special case alignment
Alignment
QuasR
Alignment
QuasR
updated 11.8 years ago by
Michael Stadler
▴ 350 • written 11.8 years ago by
Ugo Borello
▴ 340
0
votes
2
replies
1.8k
views
QuasR special case alignment
Alignment
genomes
QuasR
Alignment
genomes
QuasR
updated 11.7 years ago by
Ugo Borello
▴ 340 • written 11.7 years ago by
Michael Stadler
▴ 350
0
votes
3
replies
1.9k
views
Summarization by gene or exon or transcript
QuasR
QuasR
11.2 years ago
Michael Stadler
▴ 350
0
votes
7
replies
2.3k
views
QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
Alignment
Rattus norvegicus
BSgenome
BSgenome
QuasR
Alignment
Rattus norvegicus
BSgenome
updated 10.9 years ago by
Hervé Pagès
16k • written 10.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
1.2k
views
QuasR - importing alignment files from other aligners
quasr
updated 10.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 10.2 years ago by
sven.schuierer
• 0
0
votes
2
replies
1.5k
views
QuasR alignment interruption
quasr
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
nadia_boufaied
• 0
0
votes
1
reply
1.5k
views
Postdoctoral research fellow
QuasR
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
tarek.mohamed
▴ 10
0
votes
1
reply
1.6k
views
QuasR: spliced and unspliced alignment
quasr
alignment
updated 9.0 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.0 years ago by
nadia_boufaied
• 0
2
votes
4
replies
1.9k
views
Bowtie % mapped reads for DGE
Bowtie
quasr
rnaseq
updated 9.0 years ago by
Dario Strbenac
★ 1.5k • written 9.0 years ago by
tarek.mohamed
▴ 10
0
votes
3
replies
1.7k
views
RNAseq_alignment_SpliceMap processing time_QuasR
SpliceMap
QuasR
RNAseq
Alignment
updated 9.0 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.0 years ago by
tarek.mohamed
▴ 10
0
votes
4
replies
2.0k
views
Splicemap (in QuasR) failed while aligning 25mers
QuasR
rnaseq
alignment
splicemap
bowtie2
8.9 years ago
Gabriella
• 0
1
vote
1
reply
3.6k
views
ERROR: lazy loading failed for package 'QuasR'
QuasR
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Hackerzone85
• 0
1
vote
6
replies
1.9k
views
Multithreading problems with qalign
quasr
parallel
updated 8.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
kirt.onthank
• 0
1
vote
1
reply
1.3k
views
QuasR error message
QuasR
RNA_Seq
updated 7.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.1 years ago by
ta_awwad
▴ 10
1
vote
4
replies
1.3k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.9 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 5.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.0k
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 4.5 years ago by
Michael Stadler
▴ 350 • written 4.5 years ago by
jabbar_campbell
• 0
0
votes
1
reply
988
views
RNAseq analysis of organism not included in BSgenome using QuasR
QuasR
updated 4.3 years ago by
Michael Stadler
▴ 350 • written 4.3 years ago by
anuranjansrathore
• 0
0
votes
1
reply
1.3k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 4.0 years ago by
Michael Stadler
▴ 350 • written 4.0 years ago by
h.kozlowski
• 0
0
votes
0
replies
1.1k
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
8.1 years ago
guillaume.dachy
• 0
0
votes
1
reply
1.3k
views
Memory error building index
QuasR
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
hmabril
• 0
0
votes
0
replies
1.4k
views
QuasR for miRNA
miRNA
QuasR
miRNA
QuasR
10.7 years ago
Michael Stadler
▴ 350
0
votes
0
replies
1.2k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
8.1 years ago
guillaume.dachy
• 0
0
votes
0
replies
1.1k
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
8.0 years ago
guillaume.dachy
• 0
1
vote
0
replies
1.8k
views
QuasR - preprocessReads fails with a SRFilterResult error
quasr
quasr error
7.9 years ago
jlncrnt
▴ 10
0
votes
0
replies
1.0k
views
can not depends QuasR in another package
QuasR
7.6 years ago
zwfanwz678
• 0
0
votes
1
reply
1.3k
views
qCount with a GRangesList is very slow
QuasR
qCount
GRangesList
7.6 years ago
vakul.mohanty
▴ 20
0
votes
9
replies
2.6k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
rna seq
▴ 90
0
votes
1
reply
1.4k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
9.0 years ago
rna seq
▴ 90
0
votes
0
replies
2.0k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
genomes
QuasR
BSgenome
convert
BSgenome
genomes
QuasR
11.2 years ago
Michael Stadler
▴ 350
1
vote
2
replies
1.6k
views
Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR
quasr error
alignmentparameters
quasr
6.2 years ago
Amer Ghalawinji
• 0
0
votes
2
replies
1.5k
views
Fusion gene mutation detection
bioconductor
quasr
8.5 years ago
maedakus
▴ 10
0
votes
0
replies
1.6k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
QuasR
BSgenome
convert
BSgenome
QuasR
11.2 years ago
Guest User
★ 13k
43 results • Page
1 of 1
Recent ...
Replies
Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing
by
delhirussianescortscom
• 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Votes
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Awards
• All
Popular Question
to
ajglajd gajgflkadfj gl
• 0
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Popular Question
to
Martin Morgan
25k
Locations
• All
USA,
13 minutes ago
Barcelona/Universitat Pompeu Fabra,
15 minutes ago
The city by the bay,
44 minutes ago
India,
1 hour ago
UPF, Barcelona, Spain,
1 hour ago
Traffic: 513 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6