Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
r
•
reset
0
votes
0
replies
87
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R
ATACseqQC
27 days ago
danalvoronov
▴ 10
0
votes
4
replies
273
views
limma with interaction term
R
biostatistics
limma
Epigenetics
6 weeks ago • updated 4 weeks ago
Jitendra
▴ 10
0
votes
3
replies
1.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.1 years ago by
tanya
• 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
0
votes
3
replies
420
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse
R
SingleCellExperiment
SingleCellData
updated 3 months ago by
daenerystargaryen56
• 0 • written 3 months ago by
Sitapriya
• 0
0
votes
0
replies
182
views
multipollutant models
statistics
Regression
r
limma
3 months ago
Jitendra
▴ 10
3
votes
4
replies
475
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
4 months ago
pl23
• 0
1
vote
3
replies
1.3k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 4 months ago by
Robert Ivanek
▴ 730 • written 2.9 years ago by
ltzhou
• 0
0
votes
10
replies
728
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
4 months ago • updated 26 days ago
ScafioRuo
• 0
10
votes
10
replies
5.6k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 6 days ago by
juo5
• 0 • written 5 months ago by
Abhishek
▴ 10
0
votes
2
replies
504
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
7 months ago • updated 6 months ago
yr542
• 0
1
vote
2
replies
550
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
8 months ago
Miguel
• 0
2
votes
5
replies
1.3k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R
edgeR
RNASeq
8 months ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
462
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
Eliza
• 0
0
votes
2
replies
1.1k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 10 months ago by
hfbarrerat
• 0 • written 3.1 years ago by
Bethan
• 0
0
votes
1
reply
585
views
Subtype specific differential expression analysis
R
limmaGUI
edgeR
limma
regutools
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
qiz218591
• 0
0
votes
1
reply
470
views
DEseq2 Single cell data paired design
R
updated 11 months ago by
Marek Gierlinski
▴ 30 • written 11 months ago by
Caro
• 0
0
votes
4
replies
816
views
Combine RNA-seq
BatchEffect
R
rnaseq
updated 11 months ago by
swbarnes2
★ 1.3k • written 11 months ago by
Young Tae
• 0
1
vote
3
replies
770
views
tximport error
tximport
r
updated 11 months ago by
Michael Love
41k • written 11 months ago by
Joana
• 0
1
vote
2
replies
820
views
Filter by expression and keep probes in limma
R
filter
limma
Normalization
Microarray
11 months ago
Abdul
▴ 20
0
votes
0
replies
446
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ
R
DEP
error
11 months ago
aymanreffai
• 0
1
vote
1
reply
1.1k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST
pathview
R
updated 11 months ago by
Guido Hooiveld
★ 3.9k • written 11 months ago by
morgan.sobol
• 0
0
votes
4
replies
808
views
Unable to install BiocManager
Biocmanager
R
updated 11 months ago by
L
▴ 50 • written 11 months ago by
sidrah19220
• 0
1
vote
1
reply
1.1k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5
rhdf
r
updated 12 months ago by
Cynthia
• 0 • written 12 months ago by
Nargil
• 0
0
votes
13
replies
4.1k
views
KEGG enrichment in R and gene IDs
KEGG
enrichKEGG
R
entrezid
12 months ago
Laia
▴ 10
0
votes
3
replies
3.4k
views
Reduce the number of nodes appear in the cnetplot of clusterprofiler
cnetplot
R
clusterProfiler
updated 12 months ago by
Guido Hooiveld
★ 3.9k • written 13 months ago by
YNKIM
• 0
0
votes
1
reply
659
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 12 months ago by
Peter Hickey
▴ 670 • written 12 months ago by
cathalgking
▴ 10
0
votes
0
replies
438
views
rDGIdb package: score of the results
rDGIdb
r
12 months ago
HELEN
• 0
2
votes
1
reply
489
views
add column with name in R
name
R
column
updated 12 months ago by
helucro
▴ 70 • written 12 months ago by
sat
• 0
0
votes
4
replies
799
views
how to extract list in quantile in R
R
quantile
list
12 months ago
sat
• 0
0
votes
0
replies
493
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival
TCGAbiolinks
R
PAAD
12 months ago
Manav
• 0
0
votes
0
replies
516
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
13 months ago
Jitendra
▴ 10
3
votes
2
replies
756
views
how to extract and match information of two filein R
R
column
match
13 months ago
sat
• 0
0
votes
0
replies
463
views
News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
13 months ago
info
▴ 10
0
votes
17
replies
1.6k
views
How to check linear model
modalmatrix
limma
R
linear
13 months ago
Jitendra
▴ 10
0
votes
1
reply
696
views
customised help function in argparse() in R
command-line
R
command-line-arguments
argparse()
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Learner
• 0
0
votes
3
replies
869
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 13 months ago by
Lluís Revilla Sancho
▴ 730 • written 13 months ago by
Jitendra
▴ 10
1
vote
2
replies
789
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
13 months ago
abhisek001
• 0
0
votes
4
replies
883
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2
biomaRt
R
13 months ago
Dr.
• 0
0
votes
1
reply
795
views
Extract Intersection Values from Venn
R
Venn
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Dr.
• 0
2
votes
6
replies
1.6k
views
DMRcate
DMRcate
R
DMRcatedata
Markdown
13 months ago
yr542
• 0
0
votes
0
replies
496
views
How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
13 months ago
Luomeng
• 0
2
votes
9
replies
1.2k
views
mas5calls function doesn't work; mirna40cdf problem
R
Bioconductor
mas5calls
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Berna
• 0
0
votes
2
replies
1.5k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma
R
ExpressionData
updated 13 months ago by
Gordon Smyth
50k • written 14 months ago by
Keith
• 0
0
votes
3
replies
859
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
sat
• 0
0
votes
1
reply
605
views
Limma: how to make a table of logFC of certain genes (I need to define logFC of 62 genes specific for the cells of interest)
DifferentialExpression
limma
R
TissueMicroarrayData
updated 14 months ago by
Gordon Smyth
50k • written 14 months ago by
Элина
• 0
0
votes
2
replies
680
views
TnSeq as ZINB? Alternatives in R?
DESeq2
R
edgeR
Python
TnSeq
updated 15 months ago by
chaco001
• 0 • written 16 months ago by
David R
▴ 90
2
votes
4
replies
2.0k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 16 months ago by
abhisek001
• 0
0
votes
1
reply
620
views
Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2
MultipleComparison
r
updated 15 months ago by
Michael Love
41k • written 15 months ago by
ncorak
• 0
4
votes
6
replies
1.1k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
15 months ago
Abdul
▴ 20
50 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
Awards
• All
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Teacher
to
Peter Langfelder
★ 2.9k
Locations
• All
France,
28 minutes ago
WEHI, Melbourne, Australia,
28 minutes ago
India,
41 minutes ago
France,
41 minutes ago
Turkey,
53 minutes ago
Traffic: 700 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6