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rGADEM
•
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3
replies
1.7k
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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 8.9 years ago by
emercier
• 0 • written 9.0 years ago by
w.jarassier
• 0
0
votes
4
replies
1.5k
views
occurrence of rGADEM motifs
rGADEM
MotIV
rGADEM
MotIV
updated 12.8 years ago by
Charles Joly Beauparlant
▴ 170 • written 12.8 years ago by
mattia pelizzola
▴ 200
0
votes
2
replies
1.5k
views
rGADEM crash
rGADEM
rGADEM
11.1 years ago
Lakshmanan Iyer
▴ 50
0
votes
1
reply
1.3k
views
ChIPpeakAnno "examplePattern.fa" file
rGADEM
MotifDb
rGADEM
MotifDb
updated 11.1 years ago by
José Luis Lavín
▴ 80 • written 11.2 years ago by
Paul Shannon
▴ 750
0
votes
1
reply
1.2k
views
rGADEM crashes on Ubuntu 10.04 64-bit
rGADEM
rGADEM
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Dave S
▴ 10
1
vote
6
replies
1.5k
views
rGADEM not giving desired motif consistently
rGADEM
updated 8.3 years ago by
Charles Joly Beauparlant
▴ 170 • written 8.3 years ago by
vinod.acear
▴ 50
0
votes
1
reply
1.7k
views
rGADEM error retrieving sequences
rgadem
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
christopher.chaney
• 0
0
votes
0
replies
853
views
rGADEM caught segfault
software error
rgadem
caught segfault
GADEM
6.6 years ago
vgms3311
• 0
0
votes
0
replies
1.2k
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.8 years ago
Mercier Eloi
▴ 60
0
votes
1
reply
662
views
Error calling GADEM from rGADEM package
rGADEM
updated 11 months ago by
mohamedrefaat.1.1992
• 0 • written 17 months ago by
Nils.Rother
• 0
0
votes
0
replies
999
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.8 years ago
Chris Whelan
▴ 60
0
votes
0
replies
1.0k
views
New version of rGADEM - ChIP-Seq, de novo motif discovery
Transcription
rGADEM
Transcription
rGADEM
12.7 years ago
Charles Joly
▴ 10
0
votes
0
replies
899
views
rGADEM crash
rGADEM
rGADEM
12.3 years ago
Arnaud Droit
▴ 20
0
votes
0
replies
1.2k
views
rGADEM: e-Values for reported motifs
rGADEM
rGADEM
11.2 years ago
Alexandra Zerck
▴ 10
0
votes
0
replies
1.4k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
10.1 years ago
Bahar
▴ 10
0
votes
0
replies
1.0k
views
rGADEM bit calloc error
rGADEM
8.2 years ago
emiliomastriani
• 0
16 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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