Bioconductor RTANDEM

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peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 3 months ago by shepherl 3.5k • written 4 months ago by vaddanki • 0

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rtandem bug compilation error

5.0 years ago Ed Siefker ▴ 230

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Proteomics trigger rTANDEM Proteomics trigger rTANDEM

10.4 years ago Frederic Fournier ▴ 40

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Proteomics rTANDEM Proteomics rTANDEM

updated 10.4 years ago by Steve Lianoglou 13k • written 10.4 years ago by Frederic Fournier ▴ 40

4 results • Page 1 of 1

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Comment: Visualization of negative log CPM values by Gordon Smyth 47k

Sorry, but some of the things you say are not correct. > compound B has 2 statistically significant genes that are up-regulated No, there…

Comment: Visualization of negative log CPM values by ATpoint ★ 2.8k

Applies to both.

Comment: Visualization of negative log CPM values by Sabiha ▴ 10

@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`

Comment: Visualization of negative log CPM values by Sabiha ▴ 10

@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…

Comment: Visualization of negative log CPM values by Gordon Smyth 47k

> negative scale might perhaps indicate gene is too low to be really expressed. Yes, negative logCPMs do mean that the gene is expressed a…

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Comment: Visualization of negative log CPM values

Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?

Filtering low intensity probes in microarray data

Comment: Visualization of negative log CPM values

Adjusting for baseline when having longitudinal data, mixed model and no treatment

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