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Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Comment: DeSeq2 design fails (full model matrix is less than full rank)
by
Basti
▴ 720
As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…
Answer: Remove duplicates of colData in TreeSummarizedExperiment
by
James W. MacDonald
63k
I avoid the tidyverse as a general rule, so cannot give help regarding the use of `distinct`. It does appear to be a re-implementation of t…
Comment: DataFrame Construction With Non-standard Column
by
ATpoint
★ 3.4k
``` suppressMessages(library(S4Vectors)) DataFrame(ID = LETTERS[1:3], score = list(2:4, 6, 7:8)) #> Error in DataFrame(ID = LETTERS[1:3]…
Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Same reason that `list` works without `I`. Both `data.frame` and `DFrame` objects have an expectation that the resulting object should have…
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Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
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