Showing : rankprod • reset
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373
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Shifted volcano plot after RankProd
rankp RankProd
12 months ago Alessia • 0
1
vote
3
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1.0k
views
How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
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0
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798
views
RankProd RP function length error
rankprod rp gr2
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
3
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2
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1.1k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 20
0
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7
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1.6k
views
RankProd crashing - stability issues?
rankprod crash
6.9 years ago bhgyu ▴ 30
4
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6
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2.2k
views
Bioconductor open source policy
licenses rankprod
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
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0
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907
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Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
7.2 years ago ggyu1215 • 0
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0
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835
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How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
7.8 years ago johnanthonyholtjr • 0
0
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0
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955
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Regarding the package RankProd
microarray rankprod
8.1 years ago sancharisircar24 • 0
1
vote
1
reply
979
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Problem using RankProd
rankprod
updated 8.6 years ago by 65k • written 8.6 years ago by • 0
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0
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1.3k
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RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
8.6 years ago horcsct ▴ 10
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0
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1.1k
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Combine RankProd output Tables (up & down)
RankProd
8.6 years ago horcsct ▴ 10
0
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0
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2.0k
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Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
8.8 years ago sumedharoy • 0
5
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2
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2.3k
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RankProd: Why are p-values=0?
rankprod p-value
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
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0
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1.2k
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Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
9.0 years ago svlachavas ▴ 830
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0
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898
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Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
9.8 years ago Guest User ★ 13k
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1
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1.4k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by 50k
0
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1
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1.6k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 190
0
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0
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869
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
10.0 years ago Stefanie Busch ▴ 30
0
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3
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2.3k
views
GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 10.1 years ago by 65k • written 10.1 years ago by ▴ 30
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0
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1.2k
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Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
10.7 years ago Guest User ★ 13k
0
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0
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959
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Comparing human and mouse expression directly with RankProd
RankProd RankProd
11.3 years ago Cornwell, Adam ▴ 110
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0
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1.1k
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RankProd absurd results
qPCR RankProd qPCR RankProd
11.4 years ago Guest User ★ 13k
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0
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1.1k
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RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
11.5 years ago Guest User ★ 13k
0
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0
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1.1k
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RankProd paired-sample analysis
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
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0
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987
views
RankProd package paired-sample sesign
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
0
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1
reply
1.1k
views
meta-analysis with RankProd
RankProd RankProd
updated 12.2 years ago by ▴ 720 • written 12.2 years ago by ▴ 40
0
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1
reply
1.2k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
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2
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1.5k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
12.7 years ago boczniak767 ▴ 720
0
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0
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843
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Gene IDs returned by RankProd topGene command
RankProd RankProd
14.1 years ago Blumenberg, Miroslav ▴ 30
0
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2
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1.4k
views
Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 20
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0
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1.2k
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Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
14.4 years ago Rohan M ▴ 20
0
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1
reply
975
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 10
0
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4
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1.5k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 15.2 years ago by ▴ 70 • written 15.2 years ago by ▴ 190
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2
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1.4k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 15.3 years ago by 65k • written 15.3 years ago by ▴ 70
0
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0
replies
956
views
Rank Products- breast cancer
Cancer RankProd Cancer RankProd
15.9 years ago Eleni Christodoulou ▴ 150
0
votes
3
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1.8k
views
Error in RankProd package
limma RankProd limma RankProd
updated 17.1 years ago by ▴ 100 • written 17.1 years ago by ▴ 680
0
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0
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916
views
meaning of pfp in RankProd
RankProd RankProd
17.2 years ago Matthew McCormack ▴ 180
0
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0
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1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.4 years ago Kimpel, Mark W ▴ 890
0
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3
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1.3k
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 19.1 years ago by ▴ 340 • written 19.1 years ago by 50k
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0
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868
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A new package: RankProd
RankProd RankProd
19.1 years ago Fangxin Hong ▴ 810
41 results • Page 1 of 1
Recent ...
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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