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rankprod
•
reset
0
votes
0
replies
368
views
Shifted volcano plot after RankProd
rankp
RankProd
11 months ago
Alessia
• 0
1
vote
3
replies
1.0k
views
How can I run a paired RankProd analysis in R?
RankProd
paired
RNAseq
R
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
joker33
• 0
0
votes
0
replies
797
views
RankProd RP function length error
rankprod
rp
gr2
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
jaleh.amo
• 0
3
votes
2
replies
1.1k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod
limma
affy
bioconductor
microarray
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Tina Chapman
▴ 20
0
votes
7
replies
1.6k
views
RankProd crashing - stability issues?
rankprod
crash
6.8 years ago
bhgyu
▴ 30
4
votes
6
replies
2.2k
views
Bioconductor open source policy
licenses
rankprod
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
zeehio
• 0
0
votes
0
replies
902
views
Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray
Rankprod
7.2 years ago
ggyu1215
• 0
0
votes
0
replies
834
views
How does specifying an origin increase the power when using RPadvance?
rankprod
microarray
bioconductor
7.8 years ago
johnanthonyholtjr
• 0
0
votes
0
replies
954
views
Regarding the package RankProd
microarray
rankprod
8.1 years ago
sancharisircar24
• 0
1
vote
1
reply
977
views
Problem using RankProd
rankprod
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
icxa0409
• 0
0
votes
0
replies
1.3k
views
RankProd: simultaneously up and down regulated gene
RankProd
differential gene expression
8.6 years ago
horcsct
▴ 10
0
votes
0
replies
1.1k
views
Combine RankProd output Tables (up & down)
RankProd
8.6 years ago
horcsct
▴ 10
0
votes
0
replies
2.0k
views
Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod
microarray
8.8 years ago
sumedharoy
• 0
5
votes
2
replies
2.3k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
brilladine
• 0
0
votes
0
replies
1.2k
views
Possible implementation of two class paired Rank Products in r with package RankProd
RankProd
pairedtest
bioconductor
biologicalreplicates
9.0 years ago
svlachavas
▴ 830
0
votes
0
replies
892
views
Can Rank-production be applied to test the condition's effects on treatments?
RankProd
RankProd
9.7 years ago
Guest User
★ 13k
0
votes
1
reply
1.4k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization
probe
limma
RankProd
Normalization
probe
limma
RankProd
updated 10.0 years ago by
Stefanie Busch
▴ 30 • written 10.0 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.6k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf
RankProd
cdf
RankProd
updated 10.0 years ago by
Stefanie Busch
▴ 30 • written 10.0 years ago by
Pekka Kohonen
▴ 190
0
votes
0
replies
868
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd
RankProd
10.0 years ago
Stefanie Busch
▴ 30
0
votes
3
replies
2.3k
views
GEOquerry and virtualArray
RankProd
virtualArray
RankProd
virtualArray
updated 10.0 years ago by
James W. MacDonald
65k • written 10.0 years ago by
Blumenberg, Miroslav
▴ 30
0
votes
0
replies
1.2k
views
Rankprod- gene appearing in both up and down regulated lists?
RankProd
RankProd
10.7 years ago
Guest User
★ 13k
0
votes
0
replies
954
views
Comparing human and mouse expression directly with RankProd
RankProd
RankProd
11.3 years ago
Cornwell, Adam
▴ 110
0
votes
0
replies
1.1k
views
RankProd absurd results
qPCR
RankProd
qPCR
RankProd
11.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
RankProd analysis for Agilent Single Color array ??
limma
RankProd
limma
RankProd
11.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
RankProd paired-sample analysis
RankProd
RankProd
11.7 years ago
Maider Muñoz
▴ 20
0
votes
0
replies
987
views
RankProd package paired-sample sesign
RankProd
RankProd
11.7 years ago
Maider Muñoz
▴ 20
0
votes
1
reply
1.1k
views
meta-analysis with RankProd
RankProd
RankProd
updated 12.2 years ago by
boczniak767
▴ 720 • written 12.2 years ago by
Barbara Bo-Ju Shih
▴ 40
0
votes
1
reply
1.2k
views
Help needed with topGene function of RankProd package
RankProd
RankProd
updated 12.6 years ago by
Steve Lianoglou
★ 13k • written 12.6 years ago by
Gaurav Kumar
▴ 30
0
votes
2
replies
1.5k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd
GeneMeta
metaArray
RankProd
GeneMeta
metaArray
12.7 years ago
boczniak767
▴ 720
0
votes
0
replies
842
views
Gene IDs returned by RankProd topGene command
RankProd
RankProd
14.1 years ago
Blumenberg, Miroslav
▴ 30
0
votes
2
replies
1.4k
views
Query related to topGene functionality in RankProd library.
Cancer
probe
RankProd
Cancer
probe
RankProd
updated 14.4 years ago by
Rohan M
▴ 20 • written 14.4 years ago by
Fangxin Hong
▴ 20
0
votes
0
replies
1.2k
views
Query related to topGene functionality in RankProd library.
probe
RankProd
probe
RankProd
14.4 years ago
Rohan M
▴ 20
0
votes
1
reply
974
views
Searching miRNA probe ids and annotating probe id lists
miRNA
GO
cdf
probe
affy
RankProd
miRNA
GO
cdf
probe
affy
RankProd
updated 14.5 years ago by
Sean Davis
21k • written 14.5 years ago by
Michael Black
▴ 10
0
votes
4
replies
1.5k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation
cdf
limma
RankProd
Annotation
cdf
limma
RankProd
updated 15.2 years ago by
Dan Strumpf
▴ 70 • written 15.2 years ago by
Michal Okoniewski
▴ 190
0
votes
2
replies
1.4k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf
limma
RankProd
cdf
limma
RankProd
updated 15.2 years ago by
James W. MacDonald
65k • written 15.2 years ago by
Dan Strumpf
▴ 70
0
votes
0
replies
954
views
Rank Products- breast cancer
Cancer
RankProd
Cancer
RankProd
15.9 years ago
Eleni Christodoulou
▴ 150
0
votes
3
replies
1.8k
views
Error in RankProd package
limma
RankProd
limma
RankProd
updated 17.1 years ago by
Gunther Höning
▴ 100 • written 17.1 years ago by
Marcus Davy
▴ 680
0
votes
0
replies
915
views
meaning of pfp in RankProd
RankProd
RankProd
17.2 years ago
Matthew McCormack
▴ 180
0
votes
0
replies
1.0k
views
help with RankProd plaase
GO
Survival
cdf
genefilter
multtest
affy
limma
RankProd
Category
affycoretools
GO
cdf
17.4 years ago
Kimpel, Mark W
▴ 890
0
votes
3
replies
1.3k
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray
limma
RankProd
Microarray
limma
RankProd
updated 19.0 years ago by
Claus Mayer
▴ 340 • written 19.1 years ago by
Gordon Smyth
50k
0
votes
0
replies
865
views
A new package: RankProd
RankProd
RankProd
19.1 years ago
Fangxin Hong
▴ 810
41 results • Page
1 of 1
Recent ...
Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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