Showing : rankprod • reset
4
votes
6
replies
2.2k
views
Bioconductor open source policy
licenses rankprod
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
0
votes
2
replies
1.5k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
12.7 years ago boczniak767 ▴ 720
5
votes
2
replies
2.3k
views
RankProd: Why are p-values=0?
rankprod p-value
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
votes
2
replies
1.4k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 70
0
votes
4
replies
1.5k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 15.2 years ago by ▴ 70 • written 15.2 years ago by ▴ 190
0
votes
3
replies
1.8k
views
Error in RankProd package
limma RankProd limma RankProd
updated 17.1 years ago by ▴ 100 • written 17.1 years ago by ▴ 680
1
vote
1
reply
977
views
Problem using RankProd
rankprod
updated 8.5 years ago by 65k • written 8.5 years ago by • 0
0
votes
1
reply
974
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 19.0 years ago by ▴ 340 • written 19.0 years ago by 50k
0
votes
2
replies
1.4k
views
Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 20
0
votes
3
replies
2.3k
views
GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 30
3
votes
2
replies
1.1k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
1
vote
3
replies
1.0k
views
How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
0
votes
1
reply
1.4k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by 50k
0
votes
1
reply
1.6k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by ▴ 190
0
votes
1
reply
1.1k
views
meta-analysis with RankProd
RankProd RankProd
updated 12.2 years ago by ▴ 720 • written 12.2 years ago by ▴ 40
0
votes
0
replies
1.3k
views
RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
8.6 years ago horcsct ▴ 10
0
votes
0
replies
954
views
Regarding the package RankProd
microarray rankprod
8.1 years ago sancharisircar24 • 0
0
votes
0
replies
834
views
How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
7.8 years ago johnanthonyholtjr • 0
0
votes
0
replies
902
views
Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
7.2 years ago ggyu1215 • 0
0
votes
7
replies
1.6k
views
RankProd crashing - stability issues?
rankprod crash
6.8 years ago bhgyu ▴ 30
0
votes
0
replies
797
views
RankProd RP function length error
rankprod rp gr2
updated 5.7 years ago by 41k • written 5.7 years ago by • 0
0
votes
0
replies
864
views
A new package: RankProd
RankProd RankProd
19.1 years ago Fangxin Hong ▴ 810
0
votes
0
replies
368
views
Shifted volcano plot after RankProd
rankp RankProd
11 months ago Alessia • 0
0
votes
0
replies
1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.4 years ago Kimpel, Mark W ▴ 890
0
votes
0
replies
915
views
meaning of pfp in RankProd
RankProd RankProd
17.2 years ago Matthew McCormack ▴ 180
0
votes
0
replies
953
views
Rank Products- breast cancer
Cancer RankProd Cancer RankProd
15.9 years ago Eleni Christodoulou ▴ 150
0
votes
0
replies
842
views
Gene IDs returned by RankProd topGene command
RankProd RankProd
14.1 years ago Blumenberg, Miroslav ▴ 30
0
votes
0
replies
1.2k
views
Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
14.4 years ago Rohan M ▴ 20
0
votes
0
replies
986
views
RankProd package paired-sample sesign
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
0
votes
0
replies
1.1k
views
RankProd paired-sample analysis
RankProd RankProd
11.7 years ago Maider Muñoz ▴ 20
0
votes
0
replies
1.1k
views
RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
11.4 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
RankProd absurd results
qPCR RankProd qPCR RankProd
11.4 years ago Guest User ★ 13k
0
votes
0
replies
954
views
Comparing human and mouse expression directly with RankProd
RankProd RankProd
11.3 years ago Cornwell, Adam ▴ 110
0
votes
0
replies
1.2k
views
Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
10.7 years ago Guest User ★ 13k
0
votes
0
replies
868
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
10.0 years ago Stefanie Busch ▴ 30
0
votes
0
replies
892
views
Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
9.7 years ago Guest User ★ 13k
0
votes
0
replies
1.2k
views
Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
9.0 years ago svlachavas ▴ 830
0
votes
0
replies
2.0k
views
Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
8.8 years ago sumedharoy • 0
0
votes
0
replies
1.1k
views
Combine RankProd output Tables (up & down)
RankProd
8.6 years ago horcsct ▴ 10
41 results • Page 1 of 1
Recent ...
Replies
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts by Michael Love 41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts by Michael Love 41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data by normawiedman059 • 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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