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rcurl
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reset
2
votes
13
replies
2.8k
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SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
9.3 years ago
lep
▴ 90
2
votes
8
replies
2.0k
views
BiomaRt and phytozome
biomaRT
Rcurl
phytozome
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
s.nielsen
▴ 20
0
votes
6
replies
2.7k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
farahqureshi5
• 0
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 6.6 years ago by
Wolfgang Huber
★ 13k • written 6.6 years ago by
Bernd Klaus
▴ 610
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2
rcurl
annotate
genefilter
geneplotter
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Rémi Willamme
▴ 10
19
votes
4
replies
5.5k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 8.5 years ago by
hygine
▴ 140 • written 8.5 years ago by
enricoferrero
▴ 660
2
votes
4
replies
8.8k
views
install RCurl in R
RCurl
8.8 years ago
yueli7
▴ 20
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install
cummerbund
Rcurl
xml
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
dnajuice
▴ 20
8 results • Page
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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