Bioconductor Rcy3

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Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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823

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Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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287

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RCy3 Cytohubba

updated 3 months ago by alex.pico ▴ 20 • written 3 months ago by jzhan067 ▴ 10

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1.2k

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Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

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583

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RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

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1.3k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Caitlin ▴ 50

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857

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rcy3

updated 3.3 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

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1.3k

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago • updated 3.3 years ago Emilia ▴ 30

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728

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RCy3 Cytoscape R Newick Bioconductor

updated 3.3 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

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1.4k

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RCy3 Cytoscape Rgraphviz GOstats

4.9 years ago Matthew Thornton ▴ 350

10 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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