Bioconductor Rcy3

Showing : rcy3 • reset

votes

replies

1.4k

views

RCy3 Cytoscape Rgraphviz GOstats

5.0 years ago • updated 4.9 years ago Matthew Thornton ▴ 350

votes

replies

1.3k

views

GEOquery CancerData limma RCy3 CancerInSilico

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Caitlin ▴ 50

vote

replies

1.3k

views

Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago • updated 3.3 years ago Emilia ▴ 30

votes

replies

1.2k

views

Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

vote

replies

859

views

rcy3

updated 3.3 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

vote

824

views

Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

votes

729

views

RCy3 Cytoscape R Newick Bioconductor

updated 3.3 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

vote

587

views

RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

vote

290

views

RCy3 Cytohubba

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by jzhan067 ▴ 10

vote

263

views

Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

10 results • Page 1 of 1

Recent ...

Replies

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0