Bioconductor Reactome.db

Showing : reactome.db • reset

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reactome.db ReactomePA

4.3 years ago florianjt • 0

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reactome.db Bioconductor BiocManager

updated 4.5 years ago by Martin Morgan 25k • written 4.6 years ago by Michael Steinbaugh ▴ 90

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reactomepa reactomepa reactome bioconductor viewpathway reactome.db reactome

6.9 years ago martin.busch • 0

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reactomepa reactome.db reactome proteomics uniprot accessions

updated 7.6 years ago by willem.ligtenberg ▴ 150 • written 7.6 years ago by Miguel.Cosenza ▴ 10

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reactome.db

updated 7.8 years ago by alserg ▴ 280 • written 7.9 years ago by Lluís Revilla Sancho ▴ 760

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reactome.db bioclite

8.0 years ago Jan-Jaap • 0

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reactome.db fgsea

updated 8.1 years ago by willem.ligtenberg ▴ 150 • written 8.1 years ago by alserg ▴ 280

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reactome.db

8.2 years ago Lluís Revilla Sancho ▴ 760

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reactome.db rsqlite

updated 8.3 years ago by willem.ligtenberg ▴ 150 • written 8.3 years ago by Lluís Revilla Sancho ▴ 760

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annotationdbi reactome.db bug

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by Lluís Revilla Sancho ▴ 760

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reactome.db annotation pathways

8.6 years ago Guido Hooiveld ★ 4.1k

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biomart reactome reactome.db id

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by enricoferrero ▴ 680

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reactome.db

updated 9.8 years ago by willem.ligtenberg ▴ 150 • written 9.8 years ago by petyuk ▴ 70

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4.7k

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genesetenrichment pathways reactome.db

updated 10.1 years ago by willem.ligtenberg ▴ 150 • written 10.5 years ago by Guangchuang Yu ★ 1.2k

14 results • Page 1 of 1

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Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Votes

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Awards • All

Scholar to James W. MacDonald 68k