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reactome.db
•
reset
3
votes
4
replies
3.2k
views
Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db
ReactomePA
4.3 years ago
florianjt
• 0
5
votes
6
replies
3.4k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 4.5 years ago by
Martin Morgan
25k • written 4.6 years ago by
Michael Steinbaugh
▴ 90
0
votes
5
replies
2.5k
views
ReactomePA / Reactome: Crash when plotting
reactomepa
reactomepa reactome bioconductor viewpathway
reactome.db
reactome
6.9 years ago
martin.busch
• 0
3
votes
4
replies
2.5k
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa
reactome.db
reactome
proteomics
uniprot accessions
updated 7.6 years ago by
willem.ligtenberg
▴ 150 • written 7.6 years ago by
Miguel.Cosenza
▴ 10
0
votes
1
reply
1.4k
views
Retrieve the reactome ID of a protein
reactome.db
updated 7.8 years ago by
alserg
▴ 280 • written 7.9 years ago by
Lluís Revilla Sancho
▴ 760
0
votes
5
replies
3.4k
views
reactome.db installation problem
reactome.db
bioclite
8.0 years ago
Jan-Jaap
• 0
6
votes
15
replies
3.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 8.1 years ago by
willem.ligtenberg
▴ 150 • written 8.1 years ago by
alserg
▴ 280
3
votes
7
replies
2.7k
views
Misleading information in reactome.db
reactome.db
8.2 years ago
Lluís Revilla Sancho
▴ 760
1
vote
1
reply
1.6k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 8.3 years ago by
willem.ligtenberg
▴ 150 • written 8.3 years ago by
Lluís Revilla Sancho
▴ 760
3
votes
5
replies
2.1k
views
Selecting few ids from reactome.db
annotationdbi
reactome.db
bug
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Lluís Revilla Sancho
▴ 760
0
votes
6
replies
1.9k
views
Is reactome.db still updated?
reactome.db
annotation
pathways
8.6 years ago
Guido Hooiveld
★ 4.1k
5
votes
6
replies
3.6k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.6k
views
Reactome's bug of feature?
reactome.db
updated 9.8 years ago by
willem.ligtenberg
▴ 150 • written 9.8 years ago by
petyuk
▴ 70
8
votes
14
replies
4.7k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 10.1 years ago by
willem.ligtenberg
▴ 150 • written 10.5 years ago by
Guangchuang Yu
★ 1.2k
14 results • Page
1 of 1
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Replies
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
• 0
thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…
Answer: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
• 0
![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…
Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…
Votes
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
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