Bioconductor Reactome.db

Showing : reactome.db • reset

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3.6k

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reactome.db ReactomePA

4.9 years ago florianjt • 0

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3.9k

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reactome.db Bioconductor BiocManager

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by Michael Steinbaugh ▴ 90

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2.8k

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reactomepa reactomepa reactome bioconductor viewpathway reactome.db reactome

7.6 years ago martin.busch • 0

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2.8k

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reactomepa reactome.db reactome proteomics uniprot accessions

updated 8.2 years ago by willem.ligtenberg ▴ 150 • written 8.2 years ago by Miguel.Cosenza ▴ 10

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1.5k

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reactome.db

updated 8.5 years ago by alserg ▴ 280 • written 8.5 years ago by Lluís Revilla Sancho ▴ 760

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reactome.db bioclite

8.7 years ago Jan-Jaap • 0

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reactome.db fgsea

updated 8.8 years ago by willem.ligtenberg ▴ 150 • written 8.8 years ago by alserg ▴ 280

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reactome.db

8.9 years ago Lluís Revilla Sancho ▴ 760

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1.9k

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reactome.db rsqlite

updated 9.0 years ago by willem.ligtenberg ▴ 150 • written 9.0 years ago by Lluís Revilla Sancho ▴ 760

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2.4k

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annotationdbi reactome.db bug

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Lluís Revilla Sancho ▴ 760

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2.2k

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reactome.db annotation pathways

9.2 years ago Guido Hooiveld ★ 4.1k

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biomart reactome reactome.db id

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by enricoferrero ▴ 680

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reactome.db

updated 10.4 years ago by willem.ligtenberg ▴ 150 • written 10.4 years ago by petyuk ▴ 70

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5.3k

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genesetenrichment pathways reactome.db

updated 10.8 years ago by willem.ligtenberg ▴ 150 • written 11.2 years ago by Guangchuang Yu ★ 1.2k

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760