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reactome.db
•
reset
3
votes
4
replies
2.3k
views
Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db
ReactomePA
3.2 years ago
florianjt
• 0
5
votes
6
replies
2.4k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Michael Steinbaugh
▴ 90
0
votes
5
replies
1.9k
views
ReactomePA / Reactome: Crash when plotting
reactomepa
reactomepa reactome bioconductor viewpathway
reactome.db
reactome
5.9 years ago
martin.busch
• 0
3
votes
4
replies
1.8k
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa
reactome.db
reactome
proteomics
uniprot accessions
updated 6.5 years ago by
willem.ligtenberg
▴ 150 • written 6.5 years ago by
Miguel.Cosenza
▴ 10
0
votes
1
reply
1.1k
views
Retrieve the reactome ID of a protein
reactome.db
updated 6.8 years ago by
alserg
▴ 240 • written 6.8 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db
bioclite
6.9 years ago
Jan-Jaap
• 0
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.0 years ago by
willem.ligtenberg
▴ 150 • written 7.0 years ago by
alserg
▴ 240
3
votes
7
replies
2.1k
views
Misleading information in reactome.db
reactome.db
7.2 years ago
Lluís Revilla Sancho
▴ 730
1
vote
1
reply
1.3k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 7.2 years ago by
willem.ligtenberg
▴ 150 • written 7.2 years ago by
Lluís Revilla Sancho
▴ 730
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi
reactome.db
bug
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
6
replies
1.5k
views
Is reactome.db still updated?
reactome.db
annotation
pathways
7.5 years ago
Guido Hooiveld
★ 3.9k
5
votes
6
replies
2.4k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.3k
views
Reactome's bug of feature?
reactome.db
updated 8.7 years ago by
willem.ligtenberg
▴ 150 • written 8.7 years ago by
petyuk
▴ 70
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.0 years ago by
willem.ligtenberg
▴ 150 • written 9.4 years ago by
Guangchuang Yu
★ 1.2k
14 results • Page
1 of 1
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Replies
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards
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Peter Hickey
▴ 740
Popular Question
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sropri
• 0
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W. Evan Johnson
▴ 850
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★ 1.9k
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