Bioconductor Reactome

Showing : reactome • reset

votes

replies

2.4k

views

biomart reactome reactome.db id

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by enricoferrero ▴ 660

votes

2.0k

views

bioconductor package reactome graph

updated 8.9 years ago by Johannes Rainer ★ 2.0k • written 8.9 years ago by Deepak Tanwar ▴ 10

votes

replies

1.9k

views

reactomepa reactome

updated 6.1 years ago by Guangchuang Yu ★ 1.2k • written 6.1 years ago by heir_of_isildur88 • 0

votes

replies

1.9k

views

reactomepa reactomepa reactome bioconductor viewpathway reactome.db reactome

5.9 years ago martin.busch • 0

votes

replies

1.8k

views

reactomepa reactome.db reactome proteomics uniprot accessions

updated 6.5 years ago by willem.ligtenberg ▴ 150 • written 6.5 years ago by Miguel.Cosenza ▴ 10

votes

replies

1.8k

views

reactomepa reactome graphite

updated 7.3 years ago by gabriele.sales ▴ 100 • written 7.3 years ago by i.sudbery ▴ 30

vote

replies

1.8k

views

reactomepa reactome gsea fgsea

5.8 years ago martin.busch • 0

votes

1.4k

views

biomart REACTOME

updated 9.4 years ago by Steffen Durinck ▴ 90 • written 9.5 years ago by jz6002 • 0

votes

903

views

pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

votes

578

views

Reactome

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by S • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Awards • All