Bioconductor Read.FCS

Showing : read.FCS • reset

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874

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read.FCS flowCore

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by das.traveller • 0

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414

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Partec read.FCS flowCore

5 months ago mrescan • 0

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360

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read.FCS read.flowSet

12 months ago Pilid • 0

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684

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read.FCS flowCore

2.5 years ago Rainer • 0

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1.3k

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compensation flowCore FlowCore read.FCS

updated 3.2 years ago by SamGG ▴ 350 • written 3.2 years ago by Pepijn • 0

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1.5k

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ncdfFlow flowCore ncdfFlowSet read.FCS

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.0 years ago by alavy ▴ 30

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968

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.2 years ago j.krop • 0

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flowCore read.FCS memory_limit

5.3 years ago lloyd.izard ▴ 80

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software error R read.fcs

7.8 years ago akisheev89 • 0

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software error read.flowset() read.fcs flowcore flowcytometry

8.2 years ago e.bestion • 0

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flowcore read.fcs

8.7 years ago • updated 8.4 years ago michael.gaspar • 0

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1.5k

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flowcore read.FCS flowcytometry

updated 9.3 years ago by Jiang, Mike ★ 1.3k • written 9.5 years ago by skiaphrene ▴ 10

12 results • Page 1 of 1

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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Votes

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0