Bioconductor Read.agiMicroRna

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agimicrorna read.agimicrorna agilent microarrays

updated 6.2 years ago by Axel Klenk ▴ 990 • written 6.2 years ago by neelakandanbt • 0

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read.agiMicroRna agilent limma microarray mirna

updated 8.2 years ago by Jim Java ▴ 30 • written 8.2 years ago by santi.cabellos ▴ 10

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Comment: biomaRt not working - lazy table error by Mansi • 0

I tried `install("BiocFileCache")` - but I am using R version 4.2.2 so I couldn't upgrade `BiocManager`. I am afraid upgrading R may cause …

Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE by James W. MacDonald 64k

The short answer is that you don't. `tximport` is meant to summarize transcript abundance estimates at the gene level, and as you might ima…

Comment: Inconsistent results in DiffBind by ATpoint ★ 3.6k

One is the "raw" logFCs, not corrected for the standard error of the logFCs, the other one the shrunken logFCs from DESeq2 lfcShrink, "corr…

Answer: Can't download Bioconductor by James W. MacDonald 64k

[You need to update][1]. [1]: https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManager.html#basic-use

Comment: Can't download Bioconductor by ATpoint ★ 3.6k

Please see especially the 1st and 2nd point in https://www.bioconductor.org/help/support/posting-guide/#keypoints

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Answer: biomaRt not working - lazy table error

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