Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
readVcf
•
reset
0
votes
21
replies
4.2k
views
VariantAnnotation Errors and void outputs
variantannotation
readvcf
8.9 years ago
pifferdavide
• 0
1
vote
12
replies
2.9k
views
readVcf does not recognize tabix index
VariantAnnotation
readvcf
tabix
updated 3.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.0 years ago by
naive
• 0
1
vote
12
replies
2.8k
views
VariantAnnotation: no method for function 'path' for signature 'character'
variantannotation
readvcf
readgt
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
Kipper Fletez-Brant
▴ 150
2
votes
9
replies
2.6k
views
ReadVCF not reading samples
readvcf
vcf
variantannotation
8.9 years ago • updated 8.8 years ago
askates
▴ 10
1
vote
5
replies
4.2k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.9 years ago
dan.gatti
• 0
0
votes
5
replies
1.6k
views
VariantAnnotation VCF read error
variantannotation
readvcf
updated 9.4 years ago by
Valerie Obenchain
★ 6.8k • written 9.4 years ago by
JK
▴ 10
2
votes
5
replies
2.5k
views
VariantAnnotation: Error with ScanVcfParam
variantannotation
vcf
readvcf
filtervcf
scanvcfparam
6.6 years ago
Didi
▴ 10
1
vote
4
replies
2.0k
views
cannot allocate memory?
readVcf
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
Haiying.Kong
▴ 110
3
votes
4
replies
1.6k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
david.mas
• 0
0
votes
4
replies
2.7k
views
How to import vcf with multi sample?
vcf
readvcf
readvcfasvranges
8.2 years ago
Marcin Grzybowski
• 0
2
votes
4
replies
1.9k
views
Best way to create a VRanges object from a large VCF file?
variantannotation
readvcf
readvcfasvranges
vcf
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
ruben.drews
• 0
2
votes
3
replies
2.2k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.1 years ago
summerela
• 0
2
votes
3
replies
1.3k
views
readVcf skipping CS field in INFO
variantannotation
readVcf
updated 9.4 years ago by
Valerie Obenchain
★ 6.8k • written 9.4 years ago by
Peter Hickey
▴ 670
0
votes
2
replies
1.0k
views
does readVcf mistakenly ignore ploidy for missing genotypes?
readvcf
gt
missing
VariantAnnotation
7.1 years ago
TimothéeFlutre
▴ 80
0
votes
2
replies
1.2k
views
readVCF requires the argument "genome". What does it stand for?
Genome
readVcf
VariantAnnotation
3.0 years ago
naive
• 0
0
votes
2
replies
2.1k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.0 years ago
mjsduncan
• 0
0
votes
2
replies
1.6k
views
Subsetting info columns from a VCF and getting rsID for some row names?
R
variantannotation
vcf
scanvcfparam
readvcf
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
emily.mccann
• 0
0
votes
2
replies
1.5k
views
Duplicated rows in readVcf output
variantannotation
readvcf
updated 8.0 years ago by
Valerie Obenchain
★ 6.8k • written 8.0 years ago by
nicolas.o.rode
• 0
0
votes
1
reply
1.5k
views
readVCF (VariantAnnotation) problem with mismatched header and info fields in vcf file
annotation
vcf
readvcf
variantannotation
9.3 years ago
jls2282
• 0
2
votes
1
reply
1.3k
views
readVCF with 1000 genomes data from 20130502 fails to return genotype information
readvcf
vcf
tabix
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
Simon Coetzee
▴ 50
1
vote
1
reply
1.1k
views
Suppressing the ID value from writeVcf
readvcf
writevcf
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.4 years ago by
fongchunchan
▴ 30
0
votes
1
reply
1.5k
views
mutational signatures problems
bsgenome
readvcf
tcga
annotation
somaticsignatures
updated 8.1 years ago by
Julian Gehring
★ 1.3k • written 8.1 years ago by
jolligoodfellow
• 0
0
votes
0
replies
442
views
VariantAnnotation::readVcf incorrectly processes GATK Mutect2 vcf INFO field AS_SB_TABLE
vcf
AS_SB_TABLE
readVcf
Mutect2
VariantAnnotation
13 months ago
therealgenna
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
Awards
• All
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Teacher
to
Peter Langfelder
★ 2.9k
Locations
• All
WEHI, Melbourne, Australia,
5 minutes ago
Spain,
13 minutes ago
EMBL Heidelberg,
15 minutes ago
Denmark,
19 minutes ago
Sweden,
23 minutes ago
Traffic: 730 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6