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reads
•
reset
2
votes
3
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1.4k
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Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 4.8 years ago by
Wei Shi
★ 3.6k • written 4.8 years ago by
Raito92
▴ 60
2
votes
5
replies
897
views
Software package for RNA-seq reads simulation?
rna-seq
reads
updated 4.8 years ago by
Gordon Smyth
50k • written 4.8 years ago by
Ramiro Magno
▴ 100
0
votes
1
reply
1.2k
views
DEXseq reads all in ambiguous_readpair_position and empty categories
dexseq
reads
6.8 years ago
514028929
• 0
0
votes
2
replies
930
views
DiffBind absence of reads
diffbind
reads
bamfiles
updated 7.0 years ago by
Rory Stark
★ 5.1k • written 7.0 years ago by
kbrnrc
• 0
0
votes
7
replies
1.7k
views
Speeding up or replacing Loops to process Bam Reads
genomicranges
reads
genomicfeatures
Bam
9.0 years ago
gen
▴ 30
2
votes
2
replies
3.1k
views
DESeq: filter out low count reads
deseq
filter
reads
9.2 years ago
ccheung
• 0
0
votes
1
reply
2.1k
views
Rename read-chromosome-names to refseq-chromosome-names.
reads
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
marcovth
• 0
7 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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