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reads
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reset
2
votes
2
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3.1k
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DESeq: filter out low count reads
deseq
filter
reads
9.3 years ago
ccheung
• 0
2
votes
5
replies
929
views
Software package for RNA-seq reads simulation?
rna-seq
reads
updated 4.9 years ago by
Gordon Smyth
50k • written 4.9 years ago by
Ramiro Magno
▴ 100
2
votes
3
replies
1.4k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 4.9 years ago by
Wei Shi
★ 3.6k • written 4.9 years ago by
Raito92
▴ 60
0
votes
1
reply
1.2k
views
DEXseq reads all in ambiguous_readpair_position and empty categories
dexseq
reads
6.9 years ago
514028929
• 0
0
votes
2
replies
943
views
DiffBind absence of reads
diffbind
reads
bamfiles
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
kbrnrc
• 0
0
votes
7
replies
1.8k
views
Speeding up or replacing Loops to process Bam Reads
genomicranges
reads
genomicfeatures
Bam
9.1 years ago
gen
▴ 30
0
votes
1
reply
2.1k
views
Rename read-chromosome-names to refseq-chromosome-names.
reads
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
marcovth
• 0
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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