Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
recount3
•
reset
0
votes
0
replies
160
views
Recount3 error downloading data
recount3
recount
10 weeks ago
Max Bone
• 0
1
vote
1
reply
192
views
Transcript level expression for CCLE
recount3
recount
CCLE
updated 11 weeks ago by
Leonardo Collado Torres
★ 1.0k • written 11 weeks ago by
António Miguel de Jesus Domingues
▴ 490
0
votes
2
replies
507
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 5 months ago by
Leonardo Collado Torres
★ 1.0k • written 5 months ago by
tangming2005
▴ 190
0
votes
2
replies
493
views
recount3 monorail pipeline version
recount3
6 months ago • updated 4 months ago
Lorenzo
• 0
0
votes
2
replies
482
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 10 months ago by
ivanrebecca230
• 0 • written 10 months ago by
seline.natalie
• 0
1
vote
3
replies
975
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
David
▴ 20
0
votes
1
reply
553
views
Recount3 data correspond to TCGA data
recount3
updated 10 months ago by
seline.natalie
• 0 • written 12 months ago by
kevin lee
• 0
2
votes
3
replies
742
views
BigWig files provided by recount3
recount3
updated 13 months ago by
Leonardo Collado Torres
★ 1.0k • written 13 months ago by
mario.keller.1988
▴ 20
0
votes
2
replies
666
views
Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
dml
• 0
2
votes
11
replies
1.5k
views
Not able to download recount3 data
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
Niveditha
▴ 20
4
votes
6
replies
911
views
recount 3 protect read length metadata
recountWorkflow
recount3
updated 14 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
soever
▴ 20
0
votes
2
replies
779
views
Recount3 data download problem
recount
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
franceschini.gianmarco
• 0
2
votes
6
replies
1.2k
views
Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
Max Bone
• 0
0
votes
3
replies
1.5k
views
Recount3 error with default "recount3_url" option
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
Cornwell, Adam
▴ 110
1
vote
1
reply
721
views
searching study metadata in recount3
recount3
updated 17 months ago by
Leonardo Collado Torres
★ 1.0k • written 18 months ago by
andrew.su
▴ 10
0
votes
1
reply
689
views
recount3 transform_counts vs compute_read_counts
recount3
updated 19 months ago by
Leonardo Collado Torres
★ 1.0k • written 20 months ago by
fdelillo
• 0
2
votes
2
replies
1.9k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
22 months ago
David
▴ 20
10
votes
11
replies
2.3k
views
Counts from recount3 for DESeq2 analysis
recount3
DESeq2
updated 19 months ago by
Leonardo Collado Torres
★ 1.0k • written 2.0 years ago by
william.benit
▴ 10
1
vote
1
reply
1.0k
views
recount3 - download bigwig files for TCGA data
recount3
recount
TCGA
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.1 years ago by
Xuebing
▴ 10
0
votes
2
replies
878
views
Missing sample in recount3 data
recount3
2.1 years ago • updated 24 months ago
alex.dietrich
• 0
0
votes
1
reply
843
views
Retrieve the read counts per transcript instead of per gene
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.1 years ago by
oligoelemento
▴ 10
0
votes
1
reply
637
views
Sample tissue annotation
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.2 years ago by
M.M.M.M.
• 0
0
votes
1
reply
833
views
Distinguishing between single cell and bulk data in recount3 study explorer
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.4 years ago by
kstachelek
• 0
0
votes
2
replies
1.5k
views
Get read counts for TCGA samples via recount3
recount3
2.4 years ago
mario.keller.1988
▴ 20
0
votes
1
reply
777
views
Different read support for splice junctions using snapcount and recount3
recount3
snapcount
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.5 years ago by
mario.keller.1988
▴ 20
2
votes
2
replies
1.1k
views
[recount3] Merge gene counts tables from multiple projects (SRP)
recount3
recountWorkflow
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.5 years ago by
António Miguel de Jesus Domingues
▴ 490
2
votes
5
replies
1.3k
views
Downloading count matrix for full recount3 dataset
recount3
updated 4 weeks ago by
Leonardo Collado Torres
★ 1.0k • written 2.8 years ago by
Ben
• 0
0
votes
2
replies
1.1k
views
recount3: advice for working with an unannotated genes
recount3
updated 2.4 years ago by
devorah.fialkoff
• 0 • written 2.9 years ago by
MakeTheBrain
• 0
1
vote
1
reply
1.7k
views
Correlation analyses on TCGA data
RNA-seq
Normalization
edgeR
recount3
updated 2.9 years ago by
Leonardo Collado Torres
★ 1.0k • written 2.9 years ago by
mario.keller.1988
▴ 20
0
votes
1
reply
1.1k
views
Using recount data to calculate Intron retention
snapcount
recount3
recount
updated 3.1 years ago by
Leonardo Collado Torres
★ 1.0k • written 3.1 years ago by
Mariela Cortés López
• 0
11
votes
8
replies
2.1k
views
Error when downloading data with recount3.
recount3
updated 2.1 years ago by
chris.wilks
▴ 70 • written 3.5 years ago by
Zach Brehm
▴ 20
31 results • Page
1 of 1
Recent ...
Replies
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards
• All
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Popular Question
to
shepherl
3.8k
Locations
• All
WEHI, Melbourne, Australia,
5 minutes ago
France,
10 minutes ago
Turkey,
12 minutes ago
United States,
35 minutes ago
Canada,
1 hour ago
Traffic: 591 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6