Showing : recount3 • reset
2
votes
11
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1.5k
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Not able to download recount3 data
recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by ▴ 20
2
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6
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1.2k
views
Unable to load data from duffel.rail
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
2
votes
5
replies
1.3k
views
Downloading count matrix for full recount3 dataset
recount3
updated 4 weeks ago by ★ 1.0k • written 2.8 years ago by • 0
0
votes
3
replies
1.5k
views
Recount3 error with default "recount3_url" option
recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by ▴ 110
1
vote
3
replies
982
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 11 months ago by ★ 4.0k • written 11 months ago by ▴ 20
0
votes
2
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497
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recount3 monorail pipeline version
recount3
6 months ago • updated 4 months ago Lorenzo • 0
0
votes
2
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782
views
Recount3 data download problem
recount recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
0
votes
2
replies
669
views
Cannot download data from IDIES links
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
0
votes
2
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487
views
Recount3: PCR duplicates
pcrduplicates recount3 multimappingreads
updated 10 months ago by • 0 • written 10 months ago by • 0
0
votes
2
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512
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TCGA counts to TPM from recount3 do not seem to right
recount3 TCGA RNASeq
updated 5 months ago by ★ 1.0k • written 5 months ago by ▴ 190
1
vote
1
reply
194
views
Transcript level expression for CCLE
recount3 recount CCLE
updated 11 weeks ago by ★ 1.0k • written 11 weeks ago by ▴ 490
0
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1
reply
554
views
Recount3 data correspond to TCGA data
recount3
updated 10 months ago by • 0 • written 12 months ago by • 0
0
votes
0
replies
163
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Recount3 error downloading data
recount3 recount
10 weeks ago Max Bone • 0
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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