Showing : recount3 • reset
2
votes
11
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1.5k
views
Not able to download recount3 data
recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by ▴ 20
2
votes
6
replies
1.3k
views
Unable to load data from duffel.rail
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
0
votes
2
replies
674
views
Cannot download data from IDIES links
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
0
votes
3
replies
1.5k
views
Recount3 error with default "recount3_url" option
recount3
updated 11 months ago by ★ 1.0k • written 17 months ago by ▴ 110
0
votes
2
replies
785
views
Recount3 data download problem
recount recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
1
vote
1
reply
196
views
Transcript level expression for CCLE
recount3 recount CCLE
updated 12 weeks ago by ★ 1.0k • written 12 weeks ago by ▴ 490
0
votes
2
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506
views
recount3 monorail pipeline version
recount3
6 months ago • updated 4 months ago Lorenzo • 0
1
vote
3
replies
995
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 11 months ago by ★ 4.0k • written 11 months ago by ▴ 20
0
votes
2
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519
views
TCGA counts to TPM from recount3 do not seem to right
recount3 TCGA RNASeq
updated 5 months ago by ★ 1.0k • written 6 months ago by ▴ 190
2
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5
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1.3k
views
Downloading count matrix for full recount3 dataset
recount3
updated 5 weeks ago by ★ 1.0k • written 2.8 years ago by • 0
0
votes
1
reply
555
views
Recount3 data correspond to TCGA data
recount3
updated 10 months ago by • 0 • written 12 months ago by • 0
0
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0
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165
views
Recount3 error downloading data
recount3 recount
11 weeks ago Max Bone • 0
0
votes
2
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489
views
Recount3: PCR duplicates
pcrduplicates recount3 multimappingreads
updated 10 months ago by • 0 • written 10 months ago by • 0
13 results • Page 1 of 1
Recent ...
Replies
Comment: get BM error by Fara • 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error by Mike Smith ★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Comment: How to retrieve gene ontology GO class? by bandconductor • 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
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