Showing : recount3 • reset
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Recount3 error downloading data
recount3 recount
10 weeks ago Max Bone • 0
1
vote
1
reply
192
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Transcript level expression for CCLE
recount3 recount CCLE
updated 11 weeks ago by ★ 1.0k • written 11 weeks ago by ▴ 490
0
votes
2
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507
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TCGA counts to TPM from recount3 do not seem to right
recount3 TCGA RNASeq
updated 5 months ago by ★ 1.0k • written 5 months ago by ▴ 190
0
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2
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493
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recount3 monorail pipeline version
recount3
6 months ago • updated 4 months ago Lorenzo • 0
0
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2
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484
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Recount3: PCR duplicates
pcrduplicates recount3 multimappingreads
updated 10 months ago by • 0 • written 10 months ago by • 0
1
vote
3
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975
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 11 months ago by ★ 4.0k • written 11 months ago by ▴ 20
0
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1
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553
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Recount3 data correspond to TCGA data
recount3
updated 10 months ago by • 0 • written 12 months ago by • 0
0
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2
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667
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Cannot download data from IDIES links
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
2
votes
11
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1.5k
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Not able to download recount3 data
recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by ▴ 20
0
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2
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779
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Recount3 data download problem
recount recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
2
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6
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1.2k
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Unable to load data from duffel.rail
recount recountWorkflow recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by • 0
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3
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1.5k
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Recount3 error with default "recount3_url" option
recount3
updated 11 months ago by ★ 1.0k • written 16 months ago by ▴ 110
2
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5
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1.3k
views
Downloading count matrix for full recount3 dataset
recount3
updated 4 weeks ago by ★ 1.0k • written 2.8 years ago by • 0
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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