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recount3
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Counts from recount3 for DESeq2 analysis
recount3
DESeq2
28 days ago • updated 27 days ago
william.benit
▴ 10
0
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2
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130
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Missing sample in recount3 data
recount3
8 weeks ago • updated 19 days ago
alex.dietrich
• 0
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 1.9k
Hi Karen, I've created the `EnsDb` (for Ensembl release 106, which corresponds to ensemblgenomes release 53). You can download the file fr…
Answer: rtracklayer S.h
by
James W. MacDonald
59k
You should get the dockerfile from [Bioconductor][1]. [1]: http://www.bioconductor.org/help/docker/
Answer: HTSeq Counts no longer available
by
j.arizanova
• 0
Hi, can I ask a follow up question as I am facing exactly the same issue... The "STAR - Counts" workflow seems to generate augmented_star_g…
Comment: AssignChromosomeRegion not working in Rstudio 4.2
by
Ou, Jianhong
★ 1.3k
Hi Abhilansh, Thank you for trying ChIPpeakAnno for your data. Could you please edit your post again? I am not sure I can follow your desc…
Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
by
James W. MacDonald
59k
Please don't add comments onto years-old posts. Instead make a new post.
Votes
Answer: Variance explained (coefficient of determination) in edgeR
HTSeq Counts no longer available
Comment: Problem converting transcript to genomic coordinates with Annotation Hub
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
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