Bioconductor RecountWorkflow

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recount recountWorkflow recount3

updated 11 months ago by Leonardo Collado Torres ★ 1.0k • written 16 months ago by dml • 0

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recountWorkflow recount3

updated 14 months ago by Leonardo Collado Torres ★ 1.0k • written 16 months ago by soever ▴ 20

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recount recountWorkflow recount3

updated 11 months ago by Leonardo Collado Torres ★ 1.0k • written 16 months ago by Max Bone • 0

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recount3 recountWorkflow

updated 2.5 years ago by Leonardo Collado Torres ★ 1.0k • written 2.5 years ago by António Miguel de Jesus Domingues ▴ 490

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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