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REDSeq export data
Lihua Julie Zhu REDseq restriction enzymes
3.1 years ago pierre.reimbold • 0
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REDseq_question
Sequencing Genetics BSgenome BSgenome REDseq Sequencing Genetics BSgenome BSgenome REDseq
9.5 years ago Julie Zhu ★ 4.3k
2 results • Page 1 of 1
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Answer: CountOverlap by James W. MacDonald 61k
When you `suppressWarnings` you won't get warnings that tell you that there are problems! The main warning you will be suppressing will loo…
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis by swbarnes2 ★ 1.1k
You are using two different algorithms. You should expect them to be close, but you can't expect them to be identical.
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by JoAMWil • 0
Hi Michael, Thank you for the answers above. What might you suggest for a RIP-seq experiment with three assays - IP, input and IgG non-sp…
Comment: Question on performing filtering by gene expression on a normalized matrix in li by mohammedtoufiq91 ▴ 10
@gordonsmyth thank you for your response.
Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis by Bine ▴ 20
Thank you. Sorry I think I am a bit confused. I agree I should be more clear and show the complete analysis. **Input Limma & DESEQ2:** …
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DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Answer: Problem loading R packages on MacBook Pro
Comment: Question on performing filtering by gene expression on a normalized matrix in li
Answer: Different results between Limma and DESEQ2 for Differential Expression Analysis
Answer: Different results between Limma and DESEQ2 for Differential Expression Analysis
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