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reduce
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1
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9
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1.6k
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Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
8.4 years ago
pesquivel
• 0
1
vote
6
replies
3.2k
views
reduce function in GenomicRanges
genomicranges
reduce
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
Frocha
▴ 20
3
votes
3
replies
1.2k
views
aggregate bins in large SummarizedExperiment efficiently
granges
summarizedexperiment
reduce
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
alessandro.pastore
▴ 20
1
vote
2
replies
1.1k
views
extending GenomicRanges::reduce warning, why ?
GenomicRanges
reduce
setMethod
setGeneric
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
hauken_heyken
▴ 80
0
votes
1
reply
1.2k
views
reduce granges if mcols value are ideitical with the next intervals
granges
reduce
6.8 years ago
alessandro.pastore
▴ 20
4
votes
1
reply
3.0k
views
Collapse/Reduce in GRanges by Metadata Column
granges
merge
reduce
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
nhejazi
• 0
0
votes
0
replies
1.3k
views
Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
8.4 years ago
pesquivel
• 0
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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