Showing : referencecn.mops • reset
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cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 6.1 years ago by ▴ 540 • written 6.1 years ago by • 0
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about the runs with cn.mops
cn.mops referencecn.mops
5.7 years ago Bogdan ▴ 660
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cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 6.5 years ago by ▴ 540 • written 6.5 years ago by ▴ 90
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R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 6.1 years ago by ▴ 540 • written 6.3 years ago by ▴ 660
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How to interpret out of referencecn.mops
referencecn.mops cn.mops
4.8 years ago eddie.kaho.ho • 0
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Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 4.4 years ago by 0 • written 4.4 years ago by • 0
6 results • Page 1 of 1
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Comment: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c by Luis • 0
Thank you so much!
Comment: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c by Luis • 0
I understand, thank you very much for all the support and collaboration!
Answer: Normalized counts from LRT or Wald test? by ATpoint ★ 2.8k
If the same samples are present in the object then the normalized counts are exactly the same independent of the design or test you use.
Comment: Visualization of negative log CPM values by Gordon Smyth 47k
Sorry, I was wrong to say that log2(TPM) is always negative, but log2(TPM) is not more likely that log2(CPM) to be positive if both are com…
Comment: Visualization of negative log CPM values by Sabiha ▴ 10
@gordonsmyth Apologies, I used a wrong term, I would have mentioned raw `p-value` instead. Unfortunately, only 3 gene passed FDR (BH) in th…
Votes
Comment: Visualization of negative log CPM values
Answer: Extracting fitted expression matrix from Limma
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
Comment: Visualization of negative log CPM values
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
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