updated 7.0 years ago by
pshannon
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90
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written 7.0 years ago by
Keith Hughitt
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150
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Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
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0
Many thanks, that seems to work!
However, the estimates tend to be surprisingly high, for many genes R2 being close to 1 (quartiles being…
Answer: EnrichGO not working with db created from annotationhub
by
Lucía
•
0
I've gone through my code and I'm pretty sure the issue is not the code, but that some gene IDs (all the ones that start with LOC) are just…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
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0
Hi Rory,
Thank you for your reply! Here is the my `sessionInfo()`:
Please let me know what you think.
I really appreciate your help!
…
Comment: EnrichGO not working with db created from annotationhub
by
Lucía
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0
I used the gtf file from ncbi
Here: https://www.ncbi.nlm.nih.gov/assembly/GCF_900626175.2/
Everything was taken from there
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