Bioconductor Regioner

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annotatr regioneR gkmSVM

updated 5 months ago by Mahmoud • 0 • written 3.3 years ago by rohitsatyam102 ▴ 20

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880

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regioneR granges iranges

updated 3.5 years ago by bernatgel ▴ 150 • written 3.9 years ago by Angel Liang • 0

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671

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regioneR

updated 4.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by shoko • 0

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884

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regioneR

4.8 years ago AlejandroMA • 0

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644

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regioneR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by Miss Agnieszka Aleksandra Golicz ▴ 40

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649

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regioneR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by Miss Agnieszka Aleksandra Golicz ▴ 40

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651

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regioner

5.8 years ago peds09 • 0

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820

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regioner permtest

6.1 years ago linuxborg2 • 0

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1.9k

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regioneR permTest

6.1 years ago linuxborg2 • 0

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1.2k

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regioneR

updated 6.4 years ago by bernatgel ▴ 150 • written 6.4 years ago by gonzalpk ▴ 10

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3.1k

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regioner overlappingpeaks

updated 7.0 years ago by bernatgel ▴ 150 • written 7.0 years ago by tharveshliyakat ▴ 10

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1.2k

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regioneR

updated 7.3 years ago by bernatgel ▴ 150 • written 7.3 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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shuffle regioner seqinr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Dimitris Polychronopoulos ▴ 80

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regioneR

updated 7.8 years ago by bgel ▴ 30 • written 7.8 years ago by andreucat91 • 0

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regioner

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by rcavalca ▴ 140

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954

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genomicranges regioneR width

updated 8.2 years ago by bernatgel ▴ 150 • written 8.2 years ago by Ludo Pagie ▴ 40

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1.8k

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regioneR GRanges GCcontent

updated 8.4 years ago by bernatgel ▴ 150 • written 8.4 years ago by Dimitris Polychronopoulos ▴ 80

17 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0