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regression
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0
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2
replies
211
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WGCNA: analysis of complex trait associations with regressions
Regression
WGCNA
26 days ago • updated 21 days ago
w.cookson
• 0
5
votes
25
replies
813
views
limma models out of memory issue on Slurm HPC
Regression
limma
STATISITICS
HPC
updated 19 days ago by
Gordon Smyth
50k • written 29 days ago by
Jitendra
▴ 10
0
votes
0
replies
214
views
multipollutant models
statistics
Regression
r
limma
4 months ago
Jitendra
▴ 10
2
votes
4
replies
1.1k
views
Overfitting in limma
limma
Regression
overfitting
updated 23 months ago by
Gordon Smyth
50k • written 24 months ago by
Marek Gierlinski
▴ 30
1
vote
1
reply
796
views
limma: pvalues for coefficients topTable
TimeSeriesExperiment
Regression
top
limma
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
Eleni
• 0
0
votes
1
reply
559
views
Which Package Should I Use to Predict Model Output Using RNA Seq Data?
regression
updated 3.8 years ago by
Gordon Smyth
50k • written 3.8 years ago by
theorist
• 0
7
votes
4
replies
4.1k
views
Limma when to use zero intercept
limma
regression
differential expression
linear model
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
robert.chen
• 0
4
votes
3
replies
986
views
Diffbind for regressing multiple confounding variables (blocking factors)
diffbind
block
regression
deseq2
chipseq
updated 3.5 years ago by
Rory Stark
★ 5.1k • written 4.5 years ago by
melnuesch
▴ 10
1
vote
2
replies
777
views
EdgeR -- differentially expressed genes across a continuous variable
edger
continuous
regression
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
emb13
• 0
6
votes
7
replies
2.1k
views
Multi-level experiment with limma
limma
design and contrast matrix
differential gene expression
regression
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
Luca
• 0
3
votes
3
replies
1.2k
views
Limma - Two-color group differences *and* correlation with individual differences.
limma
regression
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
Calin-Jageman, Robert
▴ 30
2
votes
23
replies
3.5k
views
Coping with a label/class imbalance in DESeq2
deseq2
rnaseq
r
regression
updated 7.6 years ago by
Michael Love
41k • written 7.6 years ago by
bkellman
• 0
11
votes
3
replies
1.7k
views
Fit a multinomial to RNA-seq count data
voom
limma
glm
multinomial
regression
updated 7.8 years ago by
Robert Castelo
★ 3.3k • written 7.8 years ago by
rubi
▴ 110
1
vote
2
replies
3.4k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression
kernel
ridge
r
updated 7.6 years ago by
Guido Kraemer
• 0 • written 8.0 years ago by
ረ
• 0
1
vote
5
replies
1.8k
views
deseq2 normalized data
regression
deseq2
counts
updated 8.6 years ago by
Michael Love
41k • written 8.6 years ago by
akp
• 0
0
votes
1
reply
993
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.6 years ago by
Guest User
★ 13k
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 9.9 years ago by
Tarca, Adi
▴ 570 • written 9.9 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Support vector regression
Classification
Regression
Classification
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
Data Analysis for Genomics, free HarvardX course, starts April 7
Regression
Regression
10.1 years ago
Michael Love
41k
0
votes
4
replies
2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression
DESeq
DESeq2
Regression
DESeq
DESeq2
updated 10.2 years ago by
Michael Love
41k • written 10.2 years ago by
Noa Henig
▴ 60
0
votes
3
replies
8.9k
views
ggplot2 error
Regression
Regression
10.2 years ago
Alyaa Mahmoud
▴ 440
2
votes
5
replies
15k
views
Limma design and contrast matrix question.
Microarray
Regression
limma
Microarray
Regression
limma
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Matthew Thornton
▴ 350
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage
Regression
edgeR
MEDIPS
Coverage
Regression
edgeR
MEDIPS
updated 10.3 years ago by
Matthias Lienhard
▴ 240 • written 10.3 years ago by
Pierre Lindenbaum
▴ 10
0
votes
2
replies
1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing
Regression
MEDIPS
Preprocessing
Regression
MEDIPS
updated 10.3 years ago by
Lukas Chavez
▴ 570 • written 10.3 years ago by
김종환
▴ 20
0
votes
0
replies
1.7k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression
edgeR
Regression
edgeR
10.3 years ago
Gordon Smyth
50k
0
votes
0
replies
968
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression
edgeR
Regression
edgeR
10.3 years ago
Eugene Bolotin
▴ 20
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression
Survival
snpStats
Regression
Survival
snpStats
10.4 years ago
David Winsemius
▴ 40
0
votes
0
replies
3.5k
views
Inquiries about fitType on DESeq2
Regression
DESeq2
Regression
DESeq2
10.4 years ago
Michael Love
41k
2
votes
2
replies
2.2k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray
Regression
Microarray
Regression
updated 10.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Jérôme Lane
▴ 30
0
votes
3
replies
3.6k
views
lower.limits and upper.limits in glmnet
Regression
Regression
updated 10.5 years ago by
Yue Li
▴ 60 • written 10.5 years ago by
Yue Li
▴ 370
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics
Classification
Regression
Genetics
Classification
Regression
11.0 years ago
CAMDA 2013
▴ 30
0
votes
0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing
Microarray
Genetics
Classification
Clustering
Regression
Sequencing
Microarray
11.1 years ago
CAMDA 2013
▴ 30
0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.1 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
4.2k
views
edgeR choose the best model of GLM
Regression
edgeR
Regression
edgeR
updated 11.2 years ago by
Gordon Smyth
50k • written 11.2 years ago by
Eszter Ari
▴ 40
0
votes
7
replies
1.7k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression
gcrma
Regression
gcrma
updated 11.2 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
993
views
[R] lowess regression
Regression
Regression
updated 11.6 years ago by
S Ellison
▴ 10 • written 11.6 years ago by
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
lowess regression
Regression
Regression
11.6 years ago
Bogdan
▴ 670
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE
Regression
edgeR
BRAIN
SAGE
Regression
edgeR
BRAIN
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Gordon Smyth
50k
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression
limma
Regression
limma
updated 11.8 years ago by
Belinda Phipson
▴ 130 • written 11.8 years ago by
yao chen
▴ 210
0
votes
0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE
Regression
edgeR
BRAIN
SAGE
Regression
edgeR
BRAIN
11.8 years ago
alessandro.guffanti@genomnia.com
▴ 330
0
votes
0
replies
1.1k
views
about edgeR
Regression
Regression
11.8 years ago
wang peter
★ 2.0k
0
votes
0
replies
1.5k
views
design and contrast matrix for limma time series without replicates
Microarray
GO
Regression
limma
Microarray
GO
Regression
limma
11.9 years ago
Chunxuan Shao
▴ 30
0
votes
0
replies
827
views
Outcome~predictor model evaluation, repeated measurements
Regression
Regression
12.0 years ago
rad mac
▴ 10
0
votes
0
replies
1.7k
views
edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation
Regression
edgeR
DESeq
Regression
edgeR
DESeq
12.1 years ago
Gordon Smyth
50k
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression
limma
sva
Regression
limma
sva
updated 12.4 years ago by
Andrew Teschendorff
▴ 60 • written 12.4 years ago by
Jeff Leek
▴ 650
0
votes
0
replies
1.2k
views
Use of glm for multivariate logistic regression of microarray data
Microarray
Regression
Microarray
Regression
12.5 years ago
Ruppert Valentino
▴ 270
0
votes
0
replies
748
views
Binomial regression of HTqPCR data
Regression
HTqPCR
Regression
HTqPCR
12.5 years ago
Christopher Howerton
▴ 40
0
votes
0
replies
896
views
Regression analysis using expression microarray to determine phenotypic correlation
Microarray
Regression
Microarray
Regression
12.5 years ago
Ruppert Valentino
▴ 270
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression
SNPlocs
Biostrings
Regression
SNPlocs
Biostrings
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Tim Triche
★ 4.2k
50 results • Page
1 of 1
Recent ...
Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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